Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

23767923 .. 23769018

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCATTTGTTGCTCTTGAGATCAATGCATTTGGCCAGTCATTCAGGGATTATAAGGCAGAAAGGTGTGGAGGAATTTTATCGTTTGAACCACATTAACCAAACGTATGATTTTGTAAAAAAGACGAGAGAGGCGTACAAAAAATTGGATAGAGTGCAAATGAGCATATGGGAATGCTGTGAGCTCCTGAATGAGGTTGTGGATGAGAGTGATCCGGATTTGGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGGCAATTAGAAAAGACTATCCGAATGAAGATTGGCTGCACCTTACCGCTCTCATTCAAGATCTCGGGAAAGTGCTTCTTCTTCCTAAATTTGGAGGACTTCCTCAATGGGCTGTTGTTGGAGACACACTTCCTCTTGGGTGCGCTTTTGATGAATCCATCGTTCACCACAAGTACTTCACGGACAATCCGGATTCCAGAAATCCTGCGTACAACACCAAGAATGGAATTTACAAAGAAGGATGTGGACTAGAAAATGTGATGATCTTATGGGGTCATGATGACTACATGTACATGATTGCCAAGGAAAATGGGACAACTTTGCCGGAGGCTGGATTGTTTGTTATCCGGTATCACTCATTTTATCCTCTACACAAGGCAGGGGCATATACACACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

219

Amino Acids

25.28

Weight (kDa)

5.69

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	21 - 218	8.6e-97	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	308
AccIII	TCCGGA	2 cut(s)	214, 448
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	4 cut(s)	74, 234, 347, 486
AfaI	GTAC	4 cut(s)	137, 434, 470, 551
AfiI	CCNNNNNNNGG	3 cut(s)	193, 350, 590
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	2 cut(s)	88, 317
AluBI	AGCT	2 cut(s)	184, 257
AluI	AGCT	2 cut(s)	184, 257
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	2 cut(s)	214, 448
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	4 cut(s)	74, 234, 347, 486
AspLEI	GCGC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	509
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
BmcAI	AGTACT	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	3 cut(s)	214, 448, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 350, 590
Bse1I	ACTGG	1 cut(s)	36
BseAI	TCCGGA	2 cut(s)	214, 448
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	3 cut(s)	208, 229, 506
BseLI	CCNNNNNNNGG	3 cut(s)	193, 350, 590
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	4 cut(s)	215, 449, 584, 607
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	3 cut(s)	193, 350, 590
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	2 cut(s)	214, 448
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	4 cut(s)	20, 211, 319, 522
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	250
BspEI	TCCGGA	2 cut(s)	214, 448
BspHI	TCATGA	1 cut(s)	535
BspPI	GGATC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	4 cut(s)	20, 211, 319, 522
BssT1I	CCWWGG	1 cut(s)	561
BstAPI	GCANNNNNTGC	2 cut(s)	10, 247
BstAUI	TGTACA	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	258
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	3 cut(s)	208, 229, 506
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	4 cut(s)	23, 214, 322, 525
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	4 cut(s)	20, 211, 319, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 247
BstNSI	RCATGY	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	208, 229, 506
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	1 cut(s)	404
Csp6I	GTAC	4 cut(s)	136, 433, 469, 550
CviAII	CATG	3 cut(s)	536, 547, 553
CviJI	RGCY	6 cut(s)	35, 184, 257, 295, 371, 590
CviKI_1	RGCY	6 cut(s)	35, 184, 257, 295, 371, 590
CviQI	GTAC	4 cut(s)	136, 433, 469, 550
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	22, 213, 321, 524
DpnII	GATC	4 cut(s)	20, 211, 319, 522
EaeI	YGGCCR	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	2 cut(s)	6, 30
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	3 cut(s)	539, 550, 556
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	3 cut(s)	535, 546, 552
FauNDI	CATATG	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	296
FokI	GGATG	3 cut(s)	215, 236, 513
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	4 cut(s)	215, 449, 584, 607
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	539, 550, 556
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	2 cut(s)	413, 452
HpaII	CCGG	4 cut(s)	215, 449, 584, 607
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	424, 506
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	8 cut(s)	16, 187, 215, 317, 325, 449, 456, 536
Hpy8I	GTNNAC	2 cut(s)	424, 506
HpyAV	CCTTC	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	5 cut(s)	4, 28, 157, 250, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 247
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	3 cut(s)	539, 550, 556
HspAI	GCGC	1 cut(s)	402
Kpn2I	TCCGGA	2 cut(s)	214, 448
Kzo9I	GATC	4 cut(s)	20, 211, 319, 522
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	104
MalI	GATC	4 cut(s)	22, 213, 321, 524
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	4 cut(s)	20, 211, 319, 522
MboII	GAAGA	3 cut(s)	299, 329, 332
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	6 cut(s)	74, 143, 234, 264, 347, 486
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	9 cut(s)	64, 124, 187, 253, 347, 372, 402, 580, 636
Mox20I	TGGCCA	1 cut(s)	35
Mph1103I	ATGCAT	2 cut(s)	6, 30
MroI	TCCGGA	2 cut(s)	214, 448
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	4 cut(s)	215, 449, 584, 607
Mva1269I	GAATGC	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	10, 247
NdeI	CATATG	1 cut(s)	167
NdeII	GATC	4 cut(s)	20, 211, 319, 522
NlaIII	CATG	3 cut(s)	539, 550, 556
NsiI	ATGCAT	2 cut(s)	6, 30
NspI	RCATGY	1 cut(s)	550
PagI	TCATGA	1 cut(s)	535
PciI	ACATGT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	413, 452
PkrI	GCNGC	1 cut(s)	297
PscI	ACATGT	1 cut(s)	546
PsiI	TTATAA	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	4 cut(s)	137, 434, 470, 551
RsaNI	GTAC	4 cut(s)	136, 433, 469, 550
RseI	CAYNNNNRTG	1 cut(s)	551
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	4 cut(s)	20, 211, 319, 522
ScaI	AGTACT	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	7 cut(s)	67, 107, 186, 198, 259, 303, 659
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	6 cut(s)	74, 143, 234, 264, 347, 486
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	561
TaiI	ACGT	1 cut(s)	107
TasI	AATT	6 cut(s)	74, 143, 234, 264, 347, 486
TatI	WGTACW	2 cut(s)	432, 549
TfiI	GAWTC	2 cut(s)	413, 452
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	240, 300, 426
TspGWI	ACGGA	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	4 cut(s)	74, 234, 347, 486
XceI	RCATGY	1 cut(s)	550
XspI	CTAG	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	434
Zsp2I	ATGCAT	2 cut(s)	6, 30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.