Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

12642040 .. 12643424

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17840.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATCTTGGAAAAGTGCTTCTGCTTCCTAGCTTTGGAGAGCTTCCTCAATGGGCTGTTGTTGGAGACACACATCCTCTCGGTTGCGCTTTTGATGAATCCATTGTTCACCACAAGTATTTCAAGGAAAATTTGGATTACAACAATCCTTCCTACAACACCAAGAATGGGATCTACTCAGAAGGATGTGGACTGGACAATGTCATCGATCTCTTGGGGTCATGATGACTACATGTACTTGGTGGCCAAAGAAAACAGAACAACTTTGCCTAAGGCTGGATTGTTCATCATCCGGTATCACTCATTTTATCCTTTACATAGGGCAGGGGCATATAGATACCTTATGAACAAGGAGGATGAAGAGAATCTTAAGTGGCTTCAAGTATTCAACAAATATGACCTCTACAGCAAGAGCAAAGTTCGAGTTGATGTCGAAAAGGTGAAGCCATATTATTTGTCCCTCATTGAGAAGTATTTCCCAGCAAAACTGAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

166

Amino Acids

19.56

Weight (kDa)

9.24

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	129
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	34, 167, 275
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	123, 380, 388
AluBI	AGCT	2 cut(s)	32, 42
AluI	AGCT	2 cut(s)	32, 42
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	100, 451
AxyI	CCTNAGG	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	245
BccI	CCATC	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	403
BfrI	CTTAAG	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 167, 275
Bse1I	ACTGG	1 cut(s)	197
Bse21I	CCTNAGG	1 cut(s)	270
BseCI	ATCGAT	1 cut(s)	206
BseGI	GGATG	4 cut(s)	72, 190, 288, 361
BseLI	CCNNNNNNNGG	3 cut(s)	34, 167, 275
BseMII	CTCAG	2 cut(s)	191, 479
BseNI	ACTGG	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	478
BshFI	GGCC	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	3 cut(s)	34, 167, 275
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	3, 170, 207
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	2 cut(s)	190, 480
BspDI	ATCGAT	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	220
BspPI	GGATC	1 cut(s)	178
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	197
BssMI	GATC	3 cut(s)	3, 170, 207
Bst6I	CTCTTC	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	368
BstDEI	CTNAG	3 cut(s)	177, 270, 488
BstF5I	GGATG	4 cut(s)	72, 190, 288, 361
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	3 cut(s)	6, 173, 210
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	3 cut(s)	3, 170, 207
BstNSI	RCATGY	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	206
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	245
BsuTUI	ATCGAT	1 cut(s)	206
BtsCI	GGATG	4 cut(s)	72, 190, 288, 361
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	2 cut(s)	221, 232
CviJI	RGCY	7 cut(s)	32, 42, 55, 245, 275, 376, 445
CviKI_1	RGCY	7 cut(s)	32, 42, 55, 245, 275, 376, 445
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	3 cut(s)	177, 270, 488
DpnI	GATC	3 cut(s)	5, 172, 209
DpnII	GATC	3 cut(s)	3, 170, 207
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	224, 235
FaiI	YATR	8 cut(s)	222, 233, 318, 331, 333, 344, 396, 448
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	220, 231
FokI	GGATG	4 cut(s)	59, 197, 275, 368
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	292
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	224, 235
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	2 cut(s)	97, 364
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	2 cut(s)	100, 451
Hpy166II	GTNNAC	2 cut(s)	108, 190
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	108, 190
HpyAV	CCTTC	2 cut(s)	158, 175
HpyF3I	CTNAG	3 cut(s)	177, 270, 488
Hsp92II	CATG	2 cut(s)	224, 235
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	3, 170, 207
LpnPI	CCDG	5 cut(s)	178, 261, 305, 309, 492
MaeI	CTAG	1 cut(s)	29
MalI	GATC	3 cut(s)	5, 172, 209
MboI	GATC	3 cut(s)	3, 170, 207
MboII	GAAGA	1 cut(s)	371
MflI	RGATCY	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	56, 86, 346, 410, 470
Mox20I	TGGCCA	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	292
NdeII	GATC	3 cut(s)	3, 170, 207
NlaIII	CATG	2 cut(s)	224, 235
NspI	RCATGY	1 cut(s)	235
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	97, 364
PflFI	GACNNNGTC	1 cut(s)	199
PscI	ACATGT	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	199
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	3, 170, 207
SetI	ASST	5 cut(s)	34, 44, 342, 402, 441
SfcI	CTRYAG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	129
SspMI	CTAG	1 cut(s)	29
TaqI	TCGA	3 cut(s)	206, 421, 432
TasI	AATT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	97, 364
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TspDTI	ATGAA	4 cut(s)	110, 274, 359, 372
Tth111I	GACNNNGTC	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	129
XceI	RCATGY	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.