Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

23882704 .. 23883680

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18454

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGAATGCCAACACACCAAGTTGATGAAAACTTGTACCTACAGAACCACATTAACCAAACGTATGATTTTGTAAAAAAGACGAGAGAGGAGTACAAAAAATTAGATAGAGTGGAAATGAGCATATGGGAATGTTGTGAGCTCCTGAATGAGGTTGTGGATGAGAGTGACCCGGAATTGGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGGCAAGTAGAAAAGACTACCCGAGTCAAGATTGGCTGCACCTTACTGCTCTCATTCATGATCTCAGGAAAGTGCTTCTTCTTCCTAAGTTTGGAGCACTTCCTCAATATGGGCTGTTGTTGGAGACACACATCCTCTTGGGTTACTTCAAGGACAATCCGGATTCCAAAAATCCTGCGTACAACACCAAGAATGGAATTTACAAAGAAGGATGTGGACTAGAAAATGTGATGATCTCATGGGGTCATCATGACTACATGTACATGGTTGCCAAGGAAAATGGGACAACTTTGCCGGAGGCTGGATTGTTTGTTATACGGTACCACTCATTTAATCCTCTACACAAGGCAGGGGCATATACACACCTAATGAACAAGGAAGACAGAGAGAATATGAAGTGGCTTCATATTTTTAAGAAATATGACCTCTGCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

217

Amino Acids

25.47

Weight (kDa)

5.71

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	10 - 215	5.8e-83	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	537
AccIII	TCCGGA	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	192, 414
AfaI	GTAC	5 cut(s)	38, 95, 398, 479, 539
AfiI	CCNNNNNNNGG	5 cut(s)	151, 178, 308, 326, 518
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	367
AluBI	AGCT	2 cut(s)	142, 215
AluI	AGCT	2 cut(s)	142, 215
Alw21I	GWGCWC	2 cut(s)	144, 316
Alw26I	GTCTC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	238
Aor13HI	TCCGGA	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	192, 414
Asp718I	GGTACC	1 cut(s)	537
AsuC2I	CCSGG	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	2 cut(s)	144, 316
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	603
Bpu10I	CCTNAGC	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 178, 308, 326, 518
BseAI	TCCGGA	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	4 cut(s)	166, 187, 348, 434
BseLI	CCNNNNNNNGG	5 cut(s)	151, 178, 308, 326, 518
BseMII	CTCAG	2 cut(s)	207, 295
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	537
BsiHKAI	GWGCWC	2 cut(s)	144, 316
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	3 cut(s)	173, 377, 512
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	5 cut(s)	151, 178, 308, 326, 518
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	514
BsmI	GAATGC	1 cut(s)	12
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	144, 316
Bsp13I	TCCGGA	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	277, 450
BspCNI	CTCAG	2 cut(s)	208, 294
BspEI	TCCGGA	1 cut(s)	376
BspHI	TCATGA	2 cut(s)	274, 466
BspLI	GGNNCC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	537
BsrGI	TGTACA	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	277, 450
BssT1I	CCWWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	216, 281, 303
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	4 cut(s)	166, 187, 348, 434
BstKTI	GATC	2 cut(s)	280, 453
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	277, 450
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	603
BtsCI	GGATG	4 cut(s)	166, 187, 348, 434
CciI	TCATGA	2 cut(s)	274, 466
Csp6I	GTAC	5 cut(s)	37, 94, 397, 478, 538
CviAII	CATG	5 cut(s)	275, 456, 467, 475, 481
CviJI	RGCY	6 cut(s)	142, 215, 253, 331, 518, 619
CviKI_1	RGCY	6 cut(s)	142, 215, 253, 331, 518, 619
CviQI	GTAC	5 cut(s)	37, 94, 397, 478, 538
DdeI	CTNAG	3 cut(s)	216, 281, 303
DpnI	GATC	2 cut(s)	279, 452
DpnII	GATC	2 cut(s)	277, 450
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	5 cut(s)	278, 459, 470, 478, 484
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	5 cut(s)	274, 455, 466, 474, 480
FauNDI	CATATG	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	4 cut(s)	173, 194, 335, 441
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	1 cut(s)	254
HapII	CCGG	3 cut(s)	173, 377, 512
Hin1II	CATG	5 cut(s)	278, 459, 470, 478, 484
HinfI	GANTC	2 cut(s)	241, 380
HpaII	CCGG	3 cut(s)	173, 377, 512
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188III	TCNNGA	6 cut(s)	145, 245, 275, 283, 377, 467
Hpy8I	GTNNAC	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	537
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	208, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	3 cut(s)	216, 281, 303
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	278, 459, 470, 478, 484
Kpn2I	TCCGGA	1 cut(s)	376
KpnI	GGTACC	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	277, 450
LmnI	GCTCC	2 cut(s)	147, 311
LpnPI	CCDG	8 cut(s)	158, 186, 268, 390, 405, 504, 525, 552
Lsp1109I	GCAGC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	167, 359
MalI	GATC	2 cut(s)	279, 452
MboI	GATC	2 cut(s)	277, 450
MboII	GAAGA	3 cut(s)	287, 290, 608
MhlI	GDGCHC	2 cut(s)	144, 316
MluCI	AATT	4 cut(s)	101, 176, 192, 414
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	8 cut(s)	82, 145, 211, 330, 362, 508, 564, 653
MroI	TCCGGA	1 cut(s)	376
MseI	TTAA	3 cut(s)	54, 549, 630
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	3 cut(s)	173, 377, 512
MspR9I	CCNGG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	205
NciI	CCSGG	1 cut(s)	173
NdeI	CATATG	1 cut(s)	125
NdeII	GATC	2 cut(s)	277, 450
NlaIII	CATG	5 cut(s)	278, 459, 470, 478, 484
NlaIV	GGNNCC	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	478
PagI	TCATGA	2 cut(s)	274, 466
PciI	ACATGT	1 cut(s)	474
PctI	GAATGC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PscI	ACATGT	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	5 cut(s)	38, 95, 398, 479, 539
RsaNI	GTAC	5 cut(s)	37, 94, 397, 478, 538
RseI	CAYNNNNRTG	1 cut(s)	479
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	54, 549, 630
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	2 cut(s)	277, 450
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	144, 316
SetI	ASST	8 cut(s)	42, 65, 144, 156, 217, 261, 585, 645
SfcI	CTRYAG	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	101, 176, 192, 414
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	537
TaiI	ACGT	1 cut(s)	65
TasI	AATT	4 cut(s)	101, 176, 192, 414
TatI	WGTACW	2 cut(s)	93, 477
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	3 cut(s)	54, 549, 630
Tru9I	TTAA	3 cut(s)	54, 549, 630
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	6 cut(s)	42, 198, 263, 602, 611, 626
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	2 cut(s)	192, 414
XceI	RCATGY	1 cut(s)	478
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.