Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

21636521 .. 21637931

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGATGAACATTTTTCTGAGCGAAACAATGAAGTCGTGAAATCAAGCGATGCATTTGTTGCTCCTGAAATCAATGCATTTGGCCAGTCATTCAGGGATTATAATGCAGAAAGTGAGAGGCAGAAAGGTGTGGAGGAATTTTATCGTTTGAACCACATTAACCAAACGTATGATTTTGTGAAAAAGACGAGAGAGGAGTACAAAAAATTGGATAGAGTGGAAATGAGCATATGGGAATGCTGTGAGCTCCTGAATGAGGTTGTGGATGAGAGTGACCCGGATTTAGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGGCAATTAGAAAAGACTATCCGAATGAAGATTGGCTGCACCTTACCGCTCTCGTTCATGATCTCGGGAAAGTGCTTCTTCTTCCTAAGTTTGGAGGACTTCCTCAATGGGCTGTTGTTGGAGACACACATCCTCTTGGGTGCGCTTTTGATGAATCCATCGTTCACCACAAGTACTTCAAGGACAATCCGGATTCCAAAAATCCTGAAAATGGGACTACTTTGCCGGAGGCTGGATTGTTTGTTATCCGGTATCACTCATTTTATCCTCTACACAAGGCAGGGGCATATACACACCTAATGAACAAGGAAGACAAAGAGAATATGAAGTGGCTTCATATTTTTAACAAAGATGACCTCTACAGCAAGAGCAAAGTTCAAGTTGATGTCGACAAGGTCAAGCCTTACTATTTATCCCTTATTAACAAGTACTTCCCAGCAAAGCTAAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

258

Amino Acids

30.24

Weight (kDa)

5.46

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	42 - 180	4e-62	Myo-inositol oxygenase
MIOX	PF05153	177 - 258	5.9e-34	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	711
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	1 cut(s)	369
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	137, 297
AfaI	GTAC	3 cut(s)	200, 497, 752
AfiI	CCNNNNNNNGG	4 cut(s)	256, 413, 533, 554
AgsI	TTSAA	3 cut(s)	151, 502, 701
AluBI	AGCT	3 cut(s)	247, 320, 766
AluI	AGCT	3 cut(s)	247, 320, 766
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	438
Ama87I	CYCGRG	1 cut(s)	386
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	2 cut(s)	137, 297
AspLEI	GCGC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	488
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	682
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
BmcAI	AGTACT	2 cut(s)	497, 752
Bme1390I	CCNGG	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	278
BsaWI	WCCGGW	2 cut(s)	511, 570
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 413, 533, 554
Bse1I	ACTGG	1 cut(s)	85
BseAI	TCCGGA	1 cut(s)	511
BseGI	GGATG	3 cut(s)	10, 271, 451
BseLI	CCNNNNNNNGG	4 cut(s)	256, 413, 533, 554
BseMII	CTCAG	2 cut(s)	9, 312
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	757
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	4 cut(s)	278, 512, 548, 571
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	4 cut(s)	256, 413, 533, 554
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	1 cut(s)	382
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	10, 313
BspEI	TCCGGA	1 cut(s)	511
BspHI	TCATGA	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	382
BstAPI	GCANNNNNTGC	2 cut(s)	59, 310
BstDEI	CTNAG	3 cut(s)	18, 321, 408
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	10, 271, 451
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 310
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	682
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	639
BsuRI	GGCC	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	10, 271, 451
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	199, 496, 751
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	9 cut(s)	84, 247, 320, 358, 434, 554, 655, 724, 766
CviKI_1	RGCY	9 cut(s)	84, 247, 320, 358, 434, 554, 655, 724, 766
CviQI	GTAC	3 cut(s)	199, 496, 751
DdeI	CTNAG	3 cut(s)	18, 321, 408
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoT22I	ATGCAT	2 cut(s)	55, 79
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	383
FaiI	YATR	9 cut(s)	102, 171, 230, 232, 381, 610, 612, 647, 660
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	1 cut(s)	379
FauNDI	CATATG	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	3 cut(s)	17, 278, 438
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	359
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	1 cut(s)	359
GsaI	CCCAGC	1 cut(s)	761
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	4 cut(s)	278, 512, 548, 571
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	1 cut(s)	383
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	2 cut(s)	476, 515
HpaII	CCGG	4 cut(s)	278, 512, 548, 571
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	2 cut(s)	487, 712
Hpy188I	TCNGA	2 cut(s)	19, 345
Hpy188III	TCNNGA	7 cut(s)	37, 65, 250, 380, 388, 512, 527
Hpy8I	GTNNAC	2 cut(s)	487, 712
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	5 cut(s)	53, 77, 107, 313, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 310
HpyF3I	CTNAG	3 cut(s)	18, 321, 408
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	383
HspAI	GCGC	1 cut(s)	465
Kpn2I	TCCGGA	1 cut(s)	511
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	67, 252
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	384
MbiI	CCGCTC	1 cut(s)	371
MboI	GATC	1 cut(s)	382
MboII	GAAGA	4 cut(s)	362, 392, 395, 644
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	4 cut(s)	137, 206, 297, 327
MluNI	TGGCCA	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	421
Mox20I	TGGCCA	1 cut(s)	84
Mph1103I	ATGCAT	2 cut(s)	55, 79
MroI	TCCGGA	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	3 cut(s)	159, 666, 744
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	4 cut(s)	278, 512, 548, 571
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	59, 310
NciI	CCSGG	1 cut(s)	278
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	2 cut(s)	55, 79
PagI	TCATGA	1 cut(s)	379
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	476, 515
PflFI	GACNNNGTC	1 cut(s)	716
PkrI	GCNGC	1 cut(s)	360
PsiI	TTATAA	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	757
PsyI	GACNNNGTC	1 cut(s)	716
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	3 cut(s)	200, 497, 752
RsaNI	GTAC	3 cut(s)	199, 496, 751
SacI	GAGCTC	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	710
SaqAI	TTAA	3 cut(s)	159, 666, 744
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	1 cut(s)	382
ScaI	AGTACT	2 cut(s)	497, 752
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	682
Sse9I	AATT	4 cut(s)	137, 206, 297, 327
SsiI	CCGC	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	276
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	711
TasI	AATT	4 cut(s)	137, 206, 297, 327
TatI	WGTACW	3 cut(s)	198, 495, 750
TfiI	GAWTC	2 cut(s)	476, 515
Tru1I	TTAA	3 cut(s)	159, 666, 744
Tru9I	TTAA	3 cut(s)	159, 666, 744
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	9 cut(s)	21, 45, 303, 363, 368, 489, 638, 647, 662
Tth111I	GACNNNGTC	1 cut(s)	716
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	2 cut(s)	137, 297
XmiI	GTMKAC	1 cut(s)	711
ZrmI	AGTACT	2 cut(s)	497, 752
Zsp2I	ATGCAT	2 cut(s)	55, 79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.