Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

22599985 .. 22600594

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1147200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTACAATTTCGTGAAGAGGATGAGGGAGAAGTACAAAAAGTTGAATAGATTCAAAATGAGCGTATGGAAATGTTGTGAGCTTCTGAACGAGGTTGTGGATGACAGTGACCCTGACTTGGATGAAACCCAAATTGAGCACTTGTTGCAAACTGCTGAATCAATTCGGAAAGACTACCCTAGTGAAGATTGGTTACACTTGACTGCTCAAATTCATGACCTTGGAAAAGTGCTTCTTCTTCCACAATCCGGAGGACTTCCCCAATGGGTTGTTTATTTCAAGGACAAACTCGACTACAACAATCCTTCCTACAACACCAAATGTGGAATCTACTCACAAGGGTGTGGACTCGAAACTGTGACCATGTCATGGCGGCACGAGGACTATATGTACTTGGTCGCCAAGGAGAATGGAGCAACACTGCCTCAGGCTGGTTCGTTCATCATCCGGTATCACTCGTTTTATCCTTTGCATAAGGCAGGGACATATAAACACCTGATGAACAAGGAGGATGAAGACAATTTCATGTGGCTTCAAAATATTCAATCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

185

Amino Acids

21.73

Weight (kDa)

5.96

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	2 - 91	3.1e-34	Myo-inositol oxygenase
MIOX	PF05153	92 - 181	8.6e-35	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	369
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	210
AfaI	GTAC	3 cut(s)	5, 35, 392
AfiI	CCNNNNNNNGG	4 cut(s)	118, 248, 369, 431
AgsI	TTSAA	5 cut(s)	46, 55, 280, 536, 545
AleI	CACNNNNGTG	1 cut(s)	340
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	141
Aor13HI	TCCGGA	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	210
Asp700I	GAANNNNTTC	2 cut(s)	50, 162
AxyI	CCTNAGG	1 cut(s)	426
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BauI	CACGAG	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	220, 402
BsaWI	WCCGGW	2 cut(s)	248, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 248, 369, 431
Bse21I	CCTNAGG	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	220, 402
BseGI	GGATG	5 cut(s)	27, 106, 127, 444, 517
BseLI	CCNNNNNNNGG	4 cut(s)	118, 248, 369, 431
BseMII	CTCAG	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	249, 448
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	4 cut(s)	118, 248, 369, 431
BsmFI	GGGAC	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	1 cut(s)	373
BspCNI	CTCAG	1 cut(s)	439
BspEI	TCCGGA	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	2 cut(s)	220, 402
BssSI	CACGAG	1 cut(s)	377
BssT1I	CCWWGG	2 cut(s)	220, 402
Bst2BI	CACGAG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	107, 358
Bst6I	CTCTTC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	5 cut(s)	27, 106, 127, 444, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	522
Bsu36I	CCTNAGG	1 cut(s)	426
BtsCI	GGATG	5 cut(s)	27, 106, 127, 444, 517
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	112, 419
CciI	TCATGA	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	4, 34, 391
CviAII	CATG	4 cut(s)	215, 364, 369, 526
CviJI	RGCY	3 cut(s)	82, 431, 532
CviKI_1	RGCY	3 cut(s)	82, 431, 532
CviQI	GTAC	3 cut(s)	4, 34, 391
DdeI	CTNAG	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	220, 402
Eco81I	CCTNAGG	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	220, 402
ErhI	CCWWGG	2 cut(s)	220, 402
FaeI	CATG	4 cut(s)	218, 367, 372, 529
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	4 cut(s)	214, 363, 368, 525
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	5 cut(s)	34, 113, 134, 431, 524
Fsp4HI	GCNGC	1 cut(s)	374
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	374
HapII	CCGG	2 cut(s)	249, 448
Hin1II	CATG	4 cut(s)	218, 367, 372, 529
HinfI	GANTC	4 cut(s)	51, 158, 327, 348
HpaII	CCGG	2 cut(s)	249, 448
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	87, 168
Hpy188III	TCNNGA	3 cut(s)	13, 215, 249
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	2 cut(s)	107, 358
HpyCH4V	TGCA	2 cut(s)	148, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	218, 367, 372, 529
Kpn2I	TCCGGA	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	413
LpnPI	CCDG	7 cut(s)	126, 262, 413, 417, 461, 465, 509
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	107, 192, 358
MboII	GAAGA	5 cut(s)	28, 197, 227, 230, 527
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	5 cut(s)	7, 132, 162, 210, 520
MlyI	GAGTC	1 cut(s)	342
MnlI	CCTC	7 cut(s)	12, 18, 85, 245, 373, 435, 502
MroI	TCCGGA	1 cut(s)	248
MroXI	GAANNNNTTC	2 cut(s)	50, 162
MslI	CAYNNNNRTG	1 cut(s)	340
MspI	CCGG	2 cut(s)	249, 448
MwoI	GCNNNNNNNGC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	218, 367, 372, 529
NmuCI	GTSAC	2 cut(s)	107, 358
OliI	CACNNNNGTG	1 cut(s)	340
PagI	TCATGA	1 cut(s)	214
PdmI	GAANNNNTTC	2 cut(s)	50, 162
PfeI	GAWTC	3 cut(s)	51, 158, 327
PflFI	GACNNNGTC	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PsyI	GACNNNGTC	1 cut(s)	364
RsaI	GTAC	3 cut(s)	5, 35, 392
RsaNI	GTAC	3 cut(s)	4, 34, 391
RseI	CAYNNNNRTG	1 cut(s)	340
SatI	GCNGC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	4 cut(s)	84, 96, 222, 498
SmiMI	CAYNNNNRTG	1 cut(s)	340
Sse9I	AATT	5 cut(s)	7, 132, 162, 210, 520
SsiI	CCGC	1 cut(s)	373
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	180
StyI	CCWWGG	2 cut(s)	220, 402
TaaI	ACNGT	2 cut(s)	107, 358
TaqI	TCGA	2 cut(s)	291, 351
TasI	AATT	5 cut(s)	7, 132, 162, 210, 520
TatI	WGTACW	3 cut(s)	3, 33, 390
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	3 cut(s)	51, 158, 327
TscAI	CASTG	2 cut(s)	112, 426
TseFI	GTSAC	2 cut(s)	107, 358
Tsp45I	GTSAC	2 cut(s)	107, 358
TspDTI	ATGAA	6 cut(s)	138, 203, 430, 514, 515, 528
TspRI	CASTG	2 cut(s)	112, 426
Tth111I	GACNNNGTC	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	369
XapI	RAATTY	1 cut(s)	210
XmnI	GAANNNNTTC	2 cut(s)	50, 162
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.