Rorug07G0094600

Inositol oxygenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
7427899 .. 7428827
929 bp
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UTR
Exon/CDS
Intron
Rorug07G0094600.1

Sequence Viewer

Length: 414 bp
ATGGCTTCTCTTTCAGCTACCAGTCTCCGCAGCTTCCAATCCTTGCAAAGCCAGCCAATCAAAACTAGCCAGGTAACGAGGACAAGTTTGGTATCTACTGGCTGGGGGAAGAGTGGCTTCACTTCTTTGAGAACTTCCCGTTTTCACATCTGTTCCGCTGCTAAACCGGAGACTGTCCAAAAGGTGGTCGAGATTGTGAGGAAGCAACTGGCTTTGCCGGCAGAGTCCGAGGTCACCCCGGACTCCAAGTTCTCAACACTTGGTGCTGATTCTCTTGACACAGTGGAGATAGTGATGGGTTTGGAGGAAGAGTTTGACATCAACGTGGAAGAGGATAACTCTCAGAACATAACCACGGTTCAAGAAGCGGCTGATTTGATAGAGCAGCTTATTGAGAAGAAAACAGAGGCTTGA

Protein Analysis

137

Amino Acids

14.96

Weight (kDa)

4.72

Isoelectric Point (pI)

63.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP-binding PF00550 60 - 127 5.6e-11 Phosphopantetheine attachment site
PP-binding_2 PF14573 76 - 127 1.7e-06 Acyl-carrier
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 184
AciI CCGC 3 cut(s) 28, 156, 368
AdeI CACNNNGTG 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 1 cut(s) 362
AjnI CCWGG 1 cut(s) 69
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 17, 33, 388
AluI AGCT 3 cut(s) 17, 33, 388
Alw26I GTCTC 2 cut(s) 29, 164
ApeKI GCWGC 3 cut(s) 30, 158, 385
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 226
BbvI GCAGC 3 cut(s) 42, 145, 397
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 29, 164
BfaI CTAG 1 cut(s) 66
BisI GCNGC 4 cut(s) 31, 159, 369, 386
BlsI GCNGC 4 cut(s) 32, 160, 370, 387
Bme1390I CCNGG 2 cut(s) 71, 239
BmrFI CCNGG 2 cut(s) 71, 239
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpuMI CCSGG 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 228, 237, 354
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 3 cut(s) 21, 103, 213
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 3 cut(s) 228, 237, 354
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 3 cut(s) 21, 103, 213
BseXI GCAGC 3 cut(s) 42, 145, 397
BseYI CCCAGC 1 cut(s) 102
BsiSI CCGG 3 cut(s) 167, 218, 239
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 29, 164
BspACI CCGC 3 cut(s) 28, 156, 368
BspCNI CTCAG 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 3 cut(s) 21, 103, 213
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 3 cut(s) 228, 237, 354
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 3 cut(s) 175, 283, 358
Bst6I CTCTTC 3 cut(s) 104, 303, 324
BstC8I GCNNGC 2 cut(s) 53, 219
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 354
BstEII GGTNACC 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 29, 164
BstMWI GCNNNNNNNGC 2 cut(s) 52, 218
BstNI CCWGG 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 69, 237
BstV1I GCAGC 3 cut(s) 42, 145, 397
BtgI CCRYGG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 53, 219
Cfr10I RCCGGY 1 cut(s) 217
DdeI CTNAG 1 cut(s) 342
DraIII CACNNNGTG 1 cut(s) 263
Eam1104I CTCTTC 3 cut(s) 104, 303, 324
EarI CTCTTC 3 cut(s) 104, 303, 324
Eco91I GGTNACC 1 cut(s) 232
EcoO65I GGTNACC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 69
FaiI YATR 1 cut(s) 350
FalI AAGNNNNNCTT 2 cut(s) 101, 133
Fnu4HI GCNGC 4 cut(s) 31, 159, 369, 386
Fsp4HI GCNGC 4 cut(s) 31, 159, 369, 386
FspBI CTAG 1 cut(s) 66
GluI GCNGC 4 cut(s) 31, 159, 369, 386
GsaI CCCAGC 1 cut(s) 106
HapII CCGG 3 cut(s) 167, 218, 239
HinfI GANTC 3 cut(s) 224, 242, 269
HpaII CCGG 3 cut(s) 167, 218, 239
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 229, 345
Hpy188III TCNNGA 3 cut(s) 190, 275, 362
HpyCH4III ACNGT 3 cut(s) 175, 283, 358
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 218
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 324
KroI GCCGGC 1 cut(s) 217
KroNI GCCGGC 1 cut(s) 219
Lsp1109I GCAGC 3 cut(s) 42, 145, 397
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 73, 232
MboII GAAGA 4 cut(s) 121, 320, 341, 409
MlyI GAGTC 2 cut(s) 233, 236
MnlI CCTC 6 cut(s) 72, 192, 223, 298, 325, 400
MroNI GCCGGC 1 cut(s) 217
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 3 cut(s) 167, 218, 239
MspR9I CCNGG 2 cut(s) 71, 239
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 52, 218
NaeI GCCGGC 1 cut(s) 219
NciI CCSGG 1 cut(s) 239
NgoMIV GCCGGC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 232
PdiI GCCGGC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 184
PkrI GCNGC 4 cut(s) 32, 160, 370, 387
PleI GAGTC 2 cut(s) 232, 236
PpsI GAGTC 2 cut(s) 232, 236
Psp6I CCWGG 1 cut(s) 69
PspEI GGTNACC 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 323
SatI GCNGC 4 cut(s) 31, 159, 369, 386
SchI GAGTC 2 cut(s) 233, 236
ScrFI CCNGG 2 cut(s) 71, 239
SetI ASST 7 cut(s) 19, 35, 75, 186, 234, 327, 390
SmiMI CAYNNNNRTG 1 cut(s) 323
SsiI CCGC 3 cut(s) 28, 156, 368
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 69, 237
TaaI ACNGT 3 cut(s) 175, 283, 358
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 189
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 1 cut(s) 269
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 3 cut(s) 30, 158, 385
Tsp45I GTSAC 1 cut(s) 232
TspRI CASTG 1 cut(s) 288
Van91I CCANNNNNTGG 1 cut(s) 184
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.