Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

1085289 .. 1087084

Gene Structure 1796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGACGATCCTCGTTGAGAAGGCTGAGATTGTGGCCAAGGTGGAGGACCAGAATGGAACTAGTGATTTGGTGTTGGATGGTGGGTTTGTGGTTCCGAAAGACGTAGCCGAAAATGATGGATTTGTGAAGGCAGAAGGTTTAGTGTCCAACGATGAGTTCATTGCCCCTGAAATCAATGCATTTGGCCAGACATTCAGGGATTACAATGCAGAGAGTGAGAGGCAGAAAGGTGTGGAGGAATTCTACCGATTGAACCATGTTCACCAATCTTATGATTTCGTGAAGAAAATGAGAGAGGAGTACAAAAAGATGAACAGAGTTGAAATGAGCATATGGGAATGCTGTGAACTCCTCAATGAAGTTGTGGACGACAGTGATCCCGATTTGGACGAGCCCCAAATTGAGCACTTGTTGCAAACAGCAGAAGCAATTCGAAAAGACTACCCTGATGAAGACTGGCTTCACTTGACTGCTCTTATCCATGATCTCGGAAAAGTGTTGCTACTTCCTAGCTTTGGAGGCCTTCCTCAATGGGCAGTTGTTGGAGACACACATCCAGTGGGGTGCCCTTTTGATGACTCCATAGTCCACCACAGGTACTTCAAGGACAACCCGGATTACAACAGTCCGGAGTACAACAGCACTCAGTATGGGATTTATGCGCATGGGATCGGCCTGAAGAATGTCCTGATGTCCTGGGGACATGACGACTATATGTACTTGGTGGCCAAGGAAAATGGCACGACTTTGCCTGAGGCCGGATTGTTCATTATCCGGTATCACTCATTTTATCCTCTTCACAAATGTGGTGCGTATAAGCACCTGATGAGCAAGGAGGATGAAGAGAACTTGAAGTGGCTTAAAATCTTCAACAAGTATGATCTCTACAGCAAGAGCAAAGTTCGCATTGATGTCGAAAAGGTCAAGCCATATTACATGTCCCTTGTTGAGAAGTACTTCCCAGCAAAGCTGAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

327

Amino Acids

37.81

Weight (kDa)

5.05

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	76 - 326	2.6e-121	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	584
Acc16I	TGCGCA	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	564
AccIII	TCCGGA	1 cut(s)	628
AclWI	GGATC	2 cut(s)	371, 677
AcoI	YGGCCR	3 cut(s)	33, 184, 726
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	698
AfaI	GTAC	5 cut(s)	302, 599, 635, 719, 956
AfiI	CCNNNNNNNGG	2 cut(s)	515, 758
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	5 cut(s)	253, 323, 604, 853, 871
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	695
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AleI	CACNNNNGTG	1 cut(s)	804
AluBI	AGCT	2 cut(s)	513, 970
AluI	AGCT	2 cut(s)	513, 970
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	371, 677
Aor13HI	TCCGGA	1 cut(s)	628
AoxI	GGCC	6 cut(s)	33, 184, 520, 673, 726, 756
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	429, 956
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	753
BaeGI	GKGCMC	1 cut(s)	569
BalI	TGGCCA	3 cut(s)	35, 186, 728
BanI	GGYRCC	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	408
BccI	CCATC	2 cut(s)	71, 110
BcgI	CGANNNNNNTGC	2 cut(s)	895, 929
BciT130I	CCWGG	1 cut(s)	697
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	1 cut(s)	540
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	2 cut(s)	60, 510
BfmI	CTRYAG	1 cut(s)	886
BmcAI	AGTACT	1 cut(s)	956
Bme1390I	CCNGG	2 cut(s)	614, 697
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	93, 566
BmrFI	CCNGG	2 cut(s)	614, 697
BpiI	GAAGAC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	614
BsaJI	CCNNGG	3 cut(s)	36, 696, 729
BsaWI	WCCGGW	2 cut(s)	628, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 758
Bse1I	ACTGG	2 cut(s)	461, 557
Bse21I	CCTNAGG	1 cut(s)	753
Bse3DI	GCAATG	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	697
BseDI	CCNNGG	3 cut(s)	36, 696, 729
BseGI	GGATG	3 cut(s)	82, 553, 844
BseLI	CCNNNNNNNGG	2 cut(s)	515, 758
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	15, 659, 744
BseNI	ACTGG	2 cut(s)	461, 557
BseRI	GAGGAG	2 cut(s)	311, 341
BseSI	GKGCMC	1 cut(s)	569
BseYI	CCCAGC	1 cut(s)	961
BshFI	GGCC	6 cut(s)	35, 186, 522, 675, 728, 758
BshNI	GGYRCC	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	4 cut(s)	614, 629, 759, 775
BslFI	GGGAC	2 cut(s)	714, 925
BslI	CCNNNNNNNGG	2 cut(s)	515, 758
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	2 cut(s)	714, 925
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	6 cut(s)	35, 186, 522, 675, 728, 758
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	396, 408, 569
Bsp13I	TCCGGA	1 cut(s)	628
Bsp143I	GATC	5 cut(s)	6, 376, 484, 669, 880
BspANI	GGCC	6 cut(s)	35, 186, 522, 675, 728, 758
BspCNI	CTCAG	3 cut(s)	16, 658, 745
BspEI	TCCGGA	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	93, 566
BspPI	GGATC	2 cut(s)	371, 677
BspT104I	TTCGAA	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	461, 557
BssECI	CCNNGG	3 cut(s)	36, 696, 729
BssMI	GATC	5 cut(s)	6, 376, 484, 669, 880
BssT1I	CCWWGG	2 cut(s)	36, 729
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	2 cut(s)	374, 626
Bst6I	CTCTTC	2 cut(s)	801, 837
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstBI	TTCGAA	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	24, 645, 753
BstF5I	GGATG	3 cut(s)	82, 553, 844
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	5 cut(s)	9, 379, 487, 672, 883
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	5 cut(s)	6, 376, 484, 669, 880
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 519, 903
BstNI	CCWGG	1 cut(s)	697
BstNSI	RCATGY	1 cut(s)	940
BstSCI	CCNGG	2 cut(s)	612, 695
BstSFI	CTRYAG	1 cut(s)	886
BstSLI	GKGCMC	1 cut(s)	569
BstV2I	GAAGAC	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	753
BsuRI	GGCC	6 cut(s)	35, 186, 522, 675, 728, 758
BtsCI	GGATG	3 cut(s)	82, 553, 844
BtsIMutI	CAGTG	2 cut(s)	379, 564
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	5 cut(s)	301, 598, 634, 718, 955
CviAII	CATG	5 cut(s)	257, 482, 665, 704, 937
CviQI	GTAC	5 cut(s)	301, 598, 634, 718, 955
DdeI	CTNAG	3 cut(s)	24, 645, 753
DpnI	GATC	5 cut(s)	8, 378, 486, 671, 882
DpnII	GATC	5 cut(s)	6, 376, 484, 669, 880
DrdI	GACNNNNNNGTC	1 cut(s)	584
DseDI	GACNNNNNNGTC	1 cut(s)	584
EaeI	YGGCCR	3 cut(s)	33, 184, 726
Eam1104I	CTCTTC	2 cut(s)	801, 837
EarI	CTCTTC	2 cut(s)	801, 837
Eco130I	CCWWGG	2 cut(s)	36, 729
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	698
Eco81I	CCTNAGG	1 cut(s)	753
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	695
EcoT14I	CCWWGG	2 cut(s)	36, 729
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	36, 729
FaeI	CATG	5 cut(s)	260, 485, 668, 707, 940
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	2 cut(s)	714, 925
FatI	CATG	5 cut(s)	256, 481, 664, 703, 936
FauNDI	CATATG	1 cut(s)	332
FokI	GGATG	3 cut(s)	89, 540, 851
FriOI	GRGCYC	1 cut(s)	396
FspAI	RTGCGCAY	1 cut(s)	663
FspBI	CTAG	2 cut(s)	60, 510
FspI	TGCGCA	1 cut(s)	663
GlaI	GCGC	1 cut(s)	663
GsaI	CCCAGC	1 cut(s)	965
HaeIII	GGCC	6 cut(s)	35, 186, 522, 675, 728, 758
HapII	CCGG	4 cut(s)	614, 629, 759, 775
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	5 cut(s)	260, 485, 668, 707, 940
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	4 cut(s)	614, 629, 759, 775
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	4 cut(s)	262, 347, 367, 589
Hpy188I	TCNGA	2 cut(s)	96, 491
Hpy188III	TCNNGA	4 cut(s)	280, 380, 629, 688
Hpy8I	GTNNAC	4 cut(s)	262, 347, 367, 589
HpyAV	CCTTC	4 cut(s)	13, 121, 128, 533
HpyCH4III	ACNGT	2 cut(s)	374, 626
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	179, 209, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 519, 903
HpyF3I	CTNAG	3 cut(s)	24, 645, 753
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	260, 485, 668, 707, 940
HspAI	GCGC	1 cut(s)	662
Kpn2I	TCCGGA	1 cut(s)	628
Kzo9I	GATC	5 cut(s)	6, 376, 484, 669, 880
MaeI	CTAG	2 cut(s)	60, 510
MaeII	ACGT	1 cut(s)	102
MalI	GATC	5 cut(s)	8, 378, 486, 671, 882
MboI	GATC	5 cut(s)	6, 376, 484, 669, 880
MboII	GAAGA	6 cut(s)	295, 464, 691, 788, 854, 859
MhlI	GDGCHC	3 cut(s)	396, 408, 569
MlsI	TGGCCA	3 cut(s)	35, 186, 728
MluCI	AATT	3 cut(s)	239, 399, 429
MluNI	TGGCCA	3 cut(s)	35, 186, 728
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	3 cut(s)	54, 171, 523
Mox20I	TGGCCA	3 cut(s)	35, 186, 728
Mph1103I	ATGCAT	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	628
MroXI	GAANNNNTTC	2 cut(s)	429, 956
MscI	TGGCCA	3 cut(s)	35, 186, 728
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	1 cut(s)	804
Msp20I	TGGCCA	3 cut(s)	35, 186, 728
MspI	CCGG	4 cut(s)	614, 629, 759, 775
MspR9I	CCNGG	2 cut(s)	614, 697
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	697
MwoI	GCNNNNNNNGC	3 cut(s)	412, 519, 903
NciI	CCSGG	1 cut(s)	614
NdeI	CATATG	1 cut(s)	332
NdeII	GATC	5 cut(s)	6, 376, 484, 669, 880
NlaIII	CATG	5 cut(s)	260, 485, 668, 707, 940
NlaIV	GGNNCC	2 cut(s)	93, 566
NsbI	TGCGCA	1 cut(s)	663
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	940
NspV	TTCGAA	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	804
PceI	AGGCCT	1 cut(s)	522
PciI	ACATGT	1 cut(s)	936
PctI	GAATGC	1 cut(s)	344
PdmI	GAANNNNTTC	2 cut(s)	429, 956
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PscI	ACATGT	1 cut(s)	936
Psp6I	CCWGG	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	961
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	2 cut(s)	93, 566
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	5 cut(s)	302, 599, 635, 719, 956
RsaNI	GTAC	5 cut(s)	301, 598, 634, 718, 955
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	1 cut(s)	861
Sau3AI	GATC	5 cut(s)	6, 376, 484, 669, 880
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	956
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	614, 697
SduI	GDGCHC	3 cut(s)	396, 408, 569
SetI	ASST	9 cut(s)	42, 105, 139, 232, 515, 599, 825, 924, 972
SfcI	CTRYAG	1 cut(s)	886
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	804
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	3 cut(s)	239, 399, 429
SseBI	AGGCCT	1 cut(s)	522
SspMI	CTAG	2 cut(s)	60, 510
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	612, 695
StyI	CCWWGG	2 cut(s)	36, 729
TaaI	ACNGT	2 cut(s)	374, 626
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	433, 915
TasI	AATT	3 cut(s)	239, 399, 429
TatI	WGTACW	4 cut(s)	300, 633, 717, 954
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	2 cut(s)	379, 564
TspDTI	ATGAA	6 cut(s)	148, 326, 372, 465, 757, 855
TspRI	CASTG	2 cut(s)	379, 564
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	940
XmnI	GAANNNNTTC	2 cut(s)	429, 956
XspI	CTAG	2 cut(s)	60, 510
ZrmI	AGTACT	1 cut(s)	956
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.