Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004084.1

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

100189 .. 101525

Gene Structure 1337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004084.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgcggggggcgggggcgggggtggggaacccattacccgccggggcggggcggggaatcccccatctgataatatccccagacggggaacgggggcgcggggaaatttgggcgcgggggcgggagcggggggtgcggggggattataatgcagaaagtgagaggcagaaaggtgtggaggaattttatcgtttgaaccacattaaccaaacgtatgattttgtaaaaaagacgagagaggagtacaaaaaattggatagagtgcaaatgagcatatgggaatgttgtgagctcctgaatgaggttgtggatgagagtgacccggatttggatgaaccccaaattcagcatttgttgcaatcagctgaggcaattagaaaagactatccgaatgaagattggctgcaccttaccgctctcattcatgatctcgggaaagtgcttcttcttcctaaatttggaggacttcctcaatgggctgttgttggagacacacatcctcttgggtgcgcttttgatgaatccatcgttcaccacaagtacttcaaggacaatccggattccaaaaatcccgcgtacaacaccaagaatggaatttacaaagaagggtgtggactagaaaatgtgatgatctcatggggtcatgatgactacatgtacatggttgccaaggaaaatgggacaactttgccggaggctggattgtttgttatccggtatcactcattttatcctctacacaaggcaggggcatatacacacctaatgaacaaggaagacagagagaatatgaagtggcttcatatttttaacaaatatgacctctacagcaagagtaaagttcaagttgatgtcgacaaggtcaagccttactacttatcccttattaacaagtacttcccagcgaagctaaaatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

306

Amino Acids

35.23

Weight (kDa)

6.36

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AccBSI	CCGCTC	2 cut(s)	127, 416
AccI	GTMKAC	1 cut(s)	855
AccII	CGCG	3 cut(s)	99, 115, 575
AccIII	TCCGGA	1 cut(s)	556
AcsI	RAATTY	5 cut(s)	105, 182, 342, 455, 594
AfaI	GTAC	5 cut(s)	245, 542, 578, 659, 896
AfiI	CCNNNNNNNGG	7 cut(s)	48, 84, 85, 301, 328, 458, 698
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	3 cut(s)	196, 547, 845
AluBI	AGCT	3 cut(s)	292, 365, 910
AluI	AGCT	3 cut(s)	292, 365, 910
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	483
Ama87I	CYCGRG	1 cut(s)	431
Aor13HI	TCCGGA	1 cut(s)	556
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	5 cut(s)	105, 182, 342, 455, 594
AspLEI	GCGC	3 cut(s)	99, 115, 512
AsuC2I	CCSGG	2 cut(s)	43, 323
AsuHPI	GGTGA	1 cut(s)	524
AvaI	CYCGRG	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	72, 533
BcnI	CCSGG	2 cut(s)	43, 323
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	826
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
BmcAI	AGTACT	2 cut(s)	542, 896
Bme1390I	CCNGG	2 cut(s)	43, 323
BmeT110I	CYCGRG	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	43, 323
BpiI	GAAGAC	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	366
BpuMI	CCSGG	2 cut(s)	43, 323
BsaJI	CCNNGG	2 cut(s)	42, 669
BsaWI	WCCGGW	2 cut(s)	556, 714
Bsc4I	CCNNNNNNNGG	7 cut(s)	48, 84, 85, 301, 328, 458, 698
BseAI	TCCGGA	1 cut(s)	556
BseDI	CCNNGG	2 cut(s)	42, 669
BseGI	GGATG	3 cut(s)	316, 337, 496
BseLI	CCNNNNNNNGG	7 cut(s)	48, 84, 85, 301, 328, 458, 698
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	390
BseYI	CCCAGC	1 cut(s)	901
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	3 cut(s)	99, 115, 575
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	5 cut(s)	42, 323, 557, 692, 715
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	7 cut(s)	48, 84, 85, 301, 328, 458, 698
BsmAI	GTCTC	1 cut(s)	483
BsmFI	GGGAC	1 cut(s)	694
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	2 cut(s)	427, 630
BspCNI	CTCAG	1 cut(s)	358
BspEI	TCCGGA	1 cut(s)	556
BspFNI	CGCG	3 cut(s)	99, 115, 575
BspHI	TCATGA	2 cut(s)	424, 643
BspLI	GGNNCC	1 cut(s)	29
BsrBI	CCGCTC	2 cut(s)	127, 416
BsrGI	TGTACA	1 cut(s)	657
BssECI	CCNNGG	2 cut(s)	42, 669
BssMI	GATC	2 cut(s)	427, 630
BssT1I	CCWWGG	1 cut(s)	669
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstAUI	TGTACA	1 cut(s)	657
BstDEI	CTNAG	1 cut(s)	366
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	3 cut(s)	316, 337, 496
BstFNI	CGCG	3 cut(s)	99, 115, 575
BstHHI	GCGC	3 cut(s)	99, 115, 512
BstKTI	GATC	2 cut(s)	430, 633
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	2 cut(s)	427, 630
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 355
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	41, 321
BstSFI	CTRYAG	1 cut(s)	826
BstUI	CGCG	3 cut(s)	99, 115, 575
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	783
BtsCI	GGATG	3 cut(s)	316, 337, 496
CciI	TCATGA	2 cut(s)	424, 643
CfoI	GCGC	3 cut(s)	99, 115, 512
Csp6I	GTAC	5 cut(s)	244, 541, 577, 658, 895
CviAII	CATG	5 cut(s)	425, 636, 644, 655, 661
CviJI	RGCY	8 cut(s)	292, 365, 403, 479, 698, 799, 868, 910
CviKI_1	RGCY	8 cut(s)	292, 365, 403, 479, 698, 799, 868, 910
CviQI	GTAC	5 cut(s)	244, 541, 577, 658, 895
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	429, 632
DpnII	GATC	2 cut(s)	427, 630
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	669
FaeI	CATG	5 cut(s)	428, 639, 647, 658, 664
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	5 cut(s)	424, 635, 643, 654, 660
FauNDI	CATATG	1 cut(s)	275
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	3 cut(s)	323, 344, 483
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	3 cut(s)	98, 114, 511
GluI	GCNGC	1 cut(s)	404
GsaI	CCCAGC	1 cut(s)	905
HapII	CCGG	5 cut(s)	42, 323, 557, 692, 715
HhaI	GCGC	3 cut(s)	99, 115, 512
Hin1II	CATG	5 cut(s)	428, 639, 647, 658, 664
Hin6I	GCGC	3 cut(s)	97, 113, 510
HinP1I	GCGC	3 cut(s)	97, 113, 510
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	3 cut(s)	57, 521, 560
HpaII	CCGG	5 cut(s)	42, 323, 557, 692, 715
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	3 cut(s)	532, 614, 856
Hpy188I	TCNGA	2 cut(s)	69, 390
Hpy188III	TCNNGA	5 cut(s)	295, 425, 433, 557, 644
Hpy8I	GTNNAC	3 cut(s)	532, 614, 856
HpyAV	CCTTC	1 cut(s)	599
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	4 cut(s)	152, 265, 358, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 355
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	5 cut(s)	428, 639, 647, 658, 664
HspAI	GCGC	3 cut(s)	97, 113, 510
Kpn2I	TCCGGA	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	427, 630
LmnI	GCTCC	2 cut(s)	124, 297
Lsp1109I	GCAGC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	429, 632
MbiI	CCGCTC	2 cut(s)	127, 416
MboI	GATC	2 cut(s)	427, 630
MboII	GAAGA	4 cut(s)	407, 437, 440, 788
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	7 cut(s)	105, 182, 251, 342, 372, 455, 594
MmeI	TCCRAC	1 cut(s)	466
MroI	TCCGGA	1 cut(s)	556
MseI	TTAA	3 cut(s)	204, 810, 888
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	5 cut(s)	42, 323, 557, 692, 715
MspR9I	CCNGG	2 cut(s)	43, 323
MvnI	CGCG	3 cut(s)	99, 115, 575
MwoI	GCNNNNNNNGC	2 cut(s)	133, 355
NciI	CCSGG	2 cut(s)	43, 323
NdeI	CATATG	1 cut(s)	275
NdeII	GATC	2 cut(s)	427, 630
NlaIII	CATG	5 cut(s)	428, 639, 647, 658, 664
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	658
PagI	TCATGA	2 cut(s)	424, 643
PciI	ACATGT	1 cut(s)	654
PfeI	GAWTC	3 cut(s)	57, 521, 560
PflFI	GACNNNGTC	1 cut(s)	860
PkrI	GCNGC	1 cut(s)	405
PscI	ACATGT	1 cut(s)	654
PsiI	TTATAA	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	901
PspN4I	GGNNCC	1 cut(s)	29
PsyI	GACNNNGTC	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	5 cut(s)	245, 542, 578, 659, 896
RsaNI	GTAC	5 cut(s)	244, 541, 577, 658, 895
RseI	CAYNNNNRTG	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	854
SaqAI	TTAA	3 cut(s)	204, 810, 888
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	2 cut(s)	427, 630
ScaI	AGTACT	2 cut(s)	542, 896
ScrFI	CCNGG	2 cut(s)	43, 323
SduI	GDGCHC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	826
SmiMI	CAYNNNNRTG	1 cut(s)	659
Sse9I	AATT	7 cut(s)	105, 182, 251, 342, 372, 455, 594
SspMI	CTAG	1 cut(s)	617
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	41, 321
StyI	CCWWGG	1 cut(s)	669
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	855
TasI	AATT	7 cut(s)	105, 182, 251, 342, 372, 455, 594
TatI	WGTACW	4 cut(s)	243, 540, 657, 894
TfiI	GAWTC	3 cut(s)	57, 521, 560
Tru1I	TTAA	3 cut(s)	204, 810, 888
Tru9I	TTAA	3 cut(s)	204, 810, 888
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	7 cut(s)	348, 408, 413, 534, 782, 791, 806
Tth111I	GACNNNGTC	1 cut(s)	860
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	5 cut(s)	105, 182, 342, 455, 594
XceI	RCATGY	1 cut(s)	658
XmiI	GTMKAC	1 cut(s)	855
XspI	CTAG	1 cut(s)	617
ZrmI	AGTACT	2 cut(s)	542, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.