Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

5508174 .. 5510070

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016303

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGACTATCCTCATTGAGCAACCAGATCTTAATGTGCCGCAATTGGAGGTCAAGAAGGTTTTGGACTCTGAGAACAATGAAGAAATGTGTGAATTGGTATTGGATGGTGGGTTTGTGATGCCAAAAGACATAGCCGACAACGATGGATGTGTGAAGCCGGAAGTTCTTGAGTCAAATGATGAGTTCATTGCCCCCGACATCAATGCATTTGGCCAGACATTCAGGGATTATAATGCAGAAAGTGAGAGGCAGAAAAGTGTGGAGGAATTCTATAGGTTGAACCACATTCATCAGACATATGATTTTGTGAAGAGGATGAGGGAGGAGTATAGGAAGATGGATAGAGTGGAAATGAGCATTTGGGAATGCTGTGAGCTCCTTAATGAGGTTGTGGATGAAAGTGATCCTGACTTGGATGAACCGCAAATCGAGCATCTGCTGCAGACCGCTGAAGCAATTAGGAAAGACTATCCTAATGAAGATTGGCTGCATTTGACTGCTCTTATTCATGATCTTGGAAAAGTGCTTCTTCTTCCTAGCTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGAGACACACATCCTCTTGGTTGTGCTTTTGATGAATCCATTGTTCACCACAAGTATTTCGAGGGCAATCCAGATCATCACAACCCTTCCTATAACACTAAGCACGGAATTTACTCTGAAGGCTGTGGACTAGAAAATGTCATGATTTCTTGGGGACACGATGACTACATGTACTTGGTGGCCAAGGAAAATGGAACAACTTTGCCTGAAGCTGGATTGTTTGTTATCCGTTATCACTCCTTTTATCCTCTTCACAAGTCAGGGGCATATAAACATTTAATGAACAAGGAGGATAAAGAGAACTTGAAGTGGCTTAACATATTCAACAAATATGATCTCTACAGCAAGAGCAAGGTTCGAGTTGATGTCGAAAAAGTCAAGCCCTACTATTTATCTCTTATTGCCAAGTATTTCCCAGCAAAGCTGAGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

335

Amino Acids

38.94

Weight (kDa)

4.98

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	85 - 334	7.3e-126	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AciI	CCGC	3 cut(s)	38, 422, 447
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	2 cut(s)	211, 750
AcsI	RAATTY	2 cut(s)	266, 678
AcuI	CTGAAG	3 cut(s)	471, 708, 798
AfaI	GTAC	1 cut(s)	743
AfiI	CCNNNNNNNGG	3 cut(s)	385, 542, 782
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	3 cut(s)	280, 877, 895
AluBI	AGCT	4 cut(s)	376, 540, 782, 994
AluI	AGCT	4 cut(s)	376, 540, 782, 994
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	2 cut(s)	211, 750
ApeKI	GCWGC	2 cut(s)	439, 487
ApoI	RAATTY	2 cut(s)	266, 678
AsuHPI	GGTGA	1 cut(s)	608
BalI	TGGCCA	2 cut(s)	213, 752
BanII	GRGCYC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	426, 474
BccI	CCATC	4 cut(s)	98, 137, 331, 993
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	2 cut(s)	537, 701
BfmI	CTRYAG	3 cut(s)	271, 440, 910
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	3 cut(s)	38, 440, 488
BlsI	GCNGC	3 cut(s)	39, 441, 489
BmsI	GCATC	2 cut(s)	108, 442
BpuEI	CTTGAG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 542, 782
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	6 cut(s)	109, 152, 321, 400, 421, 580
BseLI	CCNNNNNNNGG	3 cut(s)	385, 542, 782
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	60, 986
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	426, 474
BseYI	CCCAGC	1 cut(s)	985
BshFI	GGCC	2 cut(s)	213, 752
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	3 cut(s)	385, 542, 782
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	738
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	213, 752
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	5 cut(s)	25, 403, 511, 643, 904
BspACI	CCGC	3 cut(s)	38, 422, 447
BspANI	GGCC	2 cut(s)	213, 752
BspCNI	CTCAG	2 cut(s)	61, 987
BspHI	TCATGA	2 cut(s)	508, 711
BspMAI	CTGCAG	1 cut(s)	444
BspPI	GGATC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	5 cut(s)	25, 403, 511, 643, 904
BssT1I	CCWWGG	1 cut(s)	753
Bst6I	CTCTTC	2 cut(s)	305, 825
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstDEI	CTNAG	3 cut(s)	69, 669, 995
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	6 cut(s)	109, 152, 321, 400, 421, 580
BstKTI	GATC	5 cut(s)	28, 406, 514, 646, 907
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	5 cut(s)	25, 403, 511, 643, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	430, 439
BstNSI	RCATGY	1 cut(s)	742
BstSFI	CTRYAG	3 cut(s)	271, 440, 910
BstV1I	GCAGC	2 cut(s)	426, 474
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	213, 752
BtsCI	GGATG	6 cut(s)	109, 152, 321, 400, 421, 580
CciI	TCATGA	2 cut(s)	508, 711
Csp6I	GTAC	1 cut(s)	742
CviAII	CATG	3 cut(s)	509, 712, 739
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	3 cut(s)	69, 669, 995
DpnI	GATC	5 cut(s)	27, 405, 513, 645, 906
DpnII	GATC	5 cut(s)	25, 403, 511, 643, 904
EaeI	YGGCCR	2 cut(s)	211, 750
Eam1104I	CTCTTC	2 cut(s)	305, 825
EarI	CTCTTC	2 cut(s)	305, 825
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	753
Eco24I	GRGCYC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	3 cut(s)	471, 708, 798
EcoICRI	GAGCTC	1 cut(s)	376
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	753
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	3 cut(s)	512, 715, 742
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	3 cut(s)	508, 711, 738
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	38, 440, 488
FokI	GGATG	6 cut(s)	116, 159, 328, 407, 428, 567
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	3 cut(s)	38, 440, 488
FspBI	CTAG	2 cut(s)	537, 701
GluI	GCNGC	3 cut(s)	38, 440, 488
GsaI	CCCAGC	1 cut(s)	989
HaeIII	GGCC	2 cut(s)	213, 752
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	3 cut(s)	512, 715, 742
HinfI	GANTC	3 cut(s)	65, 170, 605
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	616, 698
Hpy188I	TCNGA	3 cut(s)	70, 294, 688
Hpy188III	TCNNGA	6 cut(s)	52, 167, 407, 509, 641, 712
Hpy8I	GTNNAC	2 cut(s)	616, 698
HpyAV	CCTTC	3 cut(s)	49, 666, 683
HpyCH4V	TGCA	4 cut(s)	206, 236, 442, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	430, 439
HpyF3I	CTNAG	3 cut(s)	69, 669, 995
Hsp92II	CATG	3 cut(s)	512, 715, 742
Kzo9I	GATC	5 cut(s)	25, 403, 511, 643, 904
LmnI	GCTCC	1 cut(s)	381
Lsp1109I	GCAGC	2 cut(s)	426, 474
LweI	GCATC	2 cut(s)	108, 442
MaeI	CTAG	2 cut(s)	537, 701
MalI	GATC	5 cut(s)	27, 405, 513, 645, 906
MboI	GATC	5 cut(s)	25, 403, 511, 643, 904
MboII	GAAGA	7 cut(s)	92, 322, 346, 491, 521, 524, 812
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	378
MlsI	TGGCCA	2 cut(s)	213, 752
MluCI	AATT	5 cut(s)	41, 92, 266, 456, 678
MluNI	TGGCCA	2 cut(s)	213, 752
MlyI	GAGTC	2 cut(s)	59, 179
MmeI	TCCRAC	1 cut(s)	550
Mox20I	TGGCCA	2 cut(s)	213, 752
Mph1103I	ATGCAT	1 cut(s)	208
MscI	TGGCCA	2 cut(s)	213, 752
MseI	TTAA	4 cut(s)	30, 381, 848, 885
Msp20I	TGGCCA	2 cut(s)	213, 752
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	430, 439
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	5 cut(s)	25, 403, 511, 643, 904
NlaIII	CATG	3 cut(s)	512, 715, 742
NsiI	ATGCAT	1 cut(s)	208
NspI	RCATGY	1 cut(s)	742
PagI	TCATGA	2 cut(s)	508, 711
PciI	ACATGT	1 cut(s)	738
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	605
PkrI	GCNGC	3 cut(s)	39, 441, 489
PleI	GAGTC	2 cut(s)	59, 178
PpsI	GAGTC	2 cut(s)	59, 178
PscI	ACATGT	1 cut(s)	738
PsiI	TTATAA	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	985
PstI	CTGCAG	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	4 cut(s)	30, 381, 848, 885
SatI	GCNGC	3 cut(s)	38, 440, 488
Sau3AI	GATC	5 cut(s)	25, 403, 511, 643, 904
SchI	GAGTC	2 cut(s)	59, 179
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	9 cut(s)	51, 60, 278, 378, 390, 542, 784, 927, 996
SfaNI	GCATC	2 cut(s)	108, 442
SfcI	CTRYAG	3 cut(s)	271, 440, 910
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	5 cut(s)	41, 92, 266, 456, 678
SsiI	CCGC	3 cut(s)	38, 422, 447
SspMI	CTAG	2 cut(s)	537, 701
SstI	GAGCTC	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	753
TaqI	TCGA	4 cut(s)	429, 630, 928, 939
TasI	AATT	5 cut(s)	41, 92, 266, 456, 678
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	4 cut(s)	30, 381, 848, 885
Tru9I	TTAA	4 cut(s)	30, 381, 848, 885
TseI	GCWGC	2 cut(s)	439, 487
TspDTI	ATGAA	9 cut(s)	93, 175, 278, 411, 432, 492, 497, 618, 866
TspGWI	ACGGA	2 cut(s)	690, 788
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	2 cut(s)	266, 678
XceI	RCATGY	1 cut(s)	742
XspI	CTAG	2 cut(s)	537, 701
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.