Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Forward (+)

45763353 .. 45768876

Gene Structure 5524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTACACAACGGGTTGGATATTCCATCATGAACTAAAGGATTATAATGCAGAAAGTGAGAGGCAGAAAGGTGTGGAGGAATTTTATCGTTTGAACCACATTAACCAAACGTATGATTTTGTAAAAAAGACGAGAGAGGAGTACAAAAAATTGGATAGAGTGCAAATGAGCATATGGGAATGCTGTGAGCTCCTGAATGAGGTTGTAGATGAGAGTGACCTGGATTTGGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGGCAATTAGAAAAGACTATCCGAATGAAGATTGGCTGCACCTTACCGCTCTCATTCATGATCTAAGGAAAGTGCTTCTTCTTCCTAAATTCGGAGGACTTCCTCAATGGGCTGTTGTTGGAGACACACATCCTCTTGGGTGCGCTTTTGATGAATCCATCGTTCACCACAAGGCAGGGGCATATACACACCTAATGAACAAGGAAGACAAAGAGAATATGAAGTGGCTTCATATTTTTAACAAATATGACCTCTACAGCAAGAGCAAAGTTCAAGTTGATGTCGACAAGTTATCCGCTGTTCACTTGACAATCCAAAAGGCACAGCAGCAAGAATCTTGCAGTAAATTTCCCAGGTACTTTAAGCTTCTCTTGGAAATTCAATCAATGCCCACCCACTTCCTAAATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

225

Amino Acids

26.62

Weight (kDa)

5.89

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	23 - 146	1.5e-53	Myo-inositol oxygenase
MIOX	PF05153	144 - 190	2.3e-12	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
AccBSI	CCGCTC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	2 cut(s)	312, 561
AcsI	RAATTY	5 cut(s)	80, 240, 353, 611, 642
AfaI	GTAC	3 cut(s)	5, 143, 623
AfiI	CCNNNNNNNGG	3 cut(s)	199, 226, 356
AgsI	TTSAA	3 cut(s)	94, 539, 647
AjnI	CCWGG	2 cut(s)	219, 617
AluBI	AGCT	3 cut(s)	190, 263, 631
AluI	AGCT	3 cut(s)	190, 263, 631
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	301, 592
ApoI	RAATTY	5 cut(s)	80, 240, 353, 611, 642
AspLEI	GCGC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	288, 604
BccI	CCATC	2 cut(s)	33, 431
BciT130I	CCWGG	2 cut(s)	221, 619
BcoDI	GTCTC	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	520
BisI	GCNGC	2 cut(s)	302, 593
BlsI	GCNGC	2 cut(s)	303, 594
Bme1390I	CCNGG	2 cut(s)	221, 619
BmrFI	CCNGG	2 cut(s)	221, 619
BpiI	GAAGAC	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	617
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 226, 356
BseBI	CCWGG	2 cut(s)	221, 619
BseDI	CCNNGG	1 cut(s)	617
BseGI	GGATG	2 cut(s)	235, 394
BseLI	CCNNNNNNNGG	3 cut(s)	199, 226, 356
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	288, 604
BsgI	GTGCAG	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	199, 226, 356
BsmAI	GTCTC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	312, 561
BspCNI	CTCAG	1 cut(s)	256
BspHI	TCATGA	2 cut(s)	28, 322
BsrBI	CCGCTC	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	617
BssMI	GATC	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	221, 619
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	2 cut(s)	264, 329
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	235, 394
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	2 cut(s)	221, 619
BstSCI	CCNGG	2 cut(s)	219, 617
BstSFI	CTRYAG	1 cut(s)	520
BstV1I	GCAGC	2 cut(s)	288, 604
BstV2I	GAAGAC	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	235, 394
CciI	TCATGA	2 cut(s)	28, 322
CfoI	GCGC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	4, 142, 622
CviAII	CATG	2 cut(s)	29, 323
CviJI	RGCY	6 cut(s)	190, 263, 301, 377, 493, 631
CviKI_1	RGCY	6 cut(s)	190, 263, 301, 377, 493, 631
CviQI	GTAC	3 cut(s)	4, 142, 622
DdeI	CTNAG	2 cut(s)	264, 329
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	219, 617
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	2 cut(s)	32, 326
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 620, 652
FatI	CATG	2 cut(s)	28, 322
FauNDI	CATATG	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	2 cut(s)	302, 593
FokI	GGATG	2 cut(s)	242, 381
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	302, 593
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	2 cut(s)	302, 593
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	2 cut(s)	32, 326
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	2 cut(s)	419, 599
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	4 cut(s)	6, 430, 550, 568
Hpy188I	TCNGA	2 cut(s)	288, 359
Hpy188III	TCNNGA	3 cut(s)	29, 193, 323
Hpy8I	GTNNAC	4 cut(s)	6, 430, 550, 568
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	5 cut(s)	50, 163, 256, 304, 606
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	2 cut(s)	264, 329
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	32, 326
HspAI	GCGC	1 cut(s)	408
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	6 cut(s)	206, 206, 233, 426, 604, 631
Lsp1109I	GCAGC	2 cut(s)	288, 604
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	327
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	305, 335, 338, 482
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	7 cut(s)	80, 149, 240, 270, 353, 611, 642
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	9 cut(s)	54, 70, 130, 193, 259, 353, 378, 408, 527
MseI	TTAA	3 cut(s)	102, 504, 627
MspA1I	CMGCKG	2 cut(s)	263, 563
MspR9I	CCNGG	2 cut(s)	221, 619
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	2 cut(s)	221, 619
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	32, 326
NmuCI	GTSAC	1 cut(s)	215
PagI	TCATGA	2 cut(s)	28, 322
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	419, 599
PkrI	GCNGC	2 cut(s)	303, 594
PsiI	TTATAA	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	219, 617
PspGI	CCWGG	2 cut(s)	219, 617
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	3 cut(s)	5, 143, 623
RsaNI	GTAC	3 cut(s)	4, 142, 622
SacI	GAGCTC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	3 cut(s)	102, 504, 627
SatI	GCNGC	2 cut(s)	302, 593
Sau3AI	GATC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	221, 619
SduI	GDGCHC	1 cut(s)	192
SfcI	CTRYAG	1 cut(s)	520
Sse9I	AATT	7 cut(s)	80, 149, 240, 270, 353, 611, 642
SsiI	CCGC	2 cut(s)	312, 561
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	219, 617
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	549
TasI	AATT	7 cut(s)	80, 149, 240, 270, 353, 611, 642
TatI	WGTACW	2 cut(s)	3, 141
TfiI	GAWTC	2 cut(s)	419, 599
Tru1I	TTAA	3 cut(s)	102, 504, 627
Tru9I	TTAA	3 cut(s)	102, 504, 627
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	301, 592
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	8 cut(s)	45, 246, 306, 311, 432, 476, 485, 500
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	5 cut(s)	80, 240, 353, 611, 642
XmiI	GTMKAC	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.