Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

7431420 .. 7433724

Gene Structure 2305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0094800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGATCTGCGCCGGTCACAAATCGGAGATGCTGTGTCCTATCTCCGACCACATGGAGTTGGAAAAGTCTGAAGTGACCTCCTTCACCGAGTCATTCTCCAAATACCACATACCAAAGTTGAAAGATGCTTGGCCACAGGTGGAATCGGCTTTACAAGAGCATGGAATTTCTTACACACTCAATCTGGCTGAGCTTTACATGACTGTCTCAACCACCCCAAGGACCGAAGATCCAGACATCATTCACAGGGCTAGGGAGATTATTGTGCTTCTGTCCAAAACTATTGTTCCGACATATGTGGTAATTAATATACTGAATGGCTATATGCATCATGACCACATCAAAACTGGGTATCAAGAAGGTGGGCTTGCCGCAATACATGGGATCAAGAAGGAGCGATTTGCTAAACAGAGGACCAGATTCTTGGAAAACCTAAAGGACCTTGCATGCCTGATGAGTTGTCATCTGTATGTTAACGGAAACACTGTGACTGCCGCGGGAACTTCACTTGAGCATGTAAAGGTGGTCAGAATGGTCGTTGAAAGGTGTTATGTTGAAAATGTGAATCCTGCAACTATTGTCAGTCGCTTAAACGTGAGGAAAGATATGCTTAATGTGGAGAGAAGGCTTCAAGCTTTGTTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

216

Amino Acids

24.59

Weight (kDa)

7.17

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	28 - 97	2.1e-13	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	131 - 204	1.8e-09	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	500
AciI	CCGC	3 cut(s)	375, 498, 500
AclWI	GGATC	2 cut(s)	227, 395
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	124, 545, 560, 635
AluBI	AGCT	2 cut(s)	196, 638
AluI	AGCT	2 cut(s)	196, 638
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	227, 395
AoxI	GGCC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	168
AseI	ATTAAT	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	225, 417, 442
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	3 cut(s)	225, 417, 442
BalI	TGGCCA	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	375, 498
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	2 cut(s)	376, 499
Bme18I	GGWCC	3 cut(s)	225, 417, 442
BmgT120I	GGNCC	3 cut(s)	225, 417, 442
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	3 cut(s)	21, 118, 340
BmuI	ACTGGG	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	221, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	221, 498
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	6, 232, 387
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	3 cut(s)	375, 498, 500
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	500
BspHI	TCATGA	1 cut(s)	334
BspPI	GGATC	2 cut(s)	227, 395
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	221, 498
BssMI	GATC	3 cut(s)	6, 232, 387
BssT1I	CCWWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	208, 490
BstC8I	GCNNGC	2 cut(s)	372, 451
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	3 cut(s)	9, 235, 390
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	3 cut(s)	6, 232, 387
BstNSI	RCATGY	2 cut(s)	453, 521
BstUI	CGCG	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	6, 232
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	2 cut(s)	6, 232
BsuRI	GGCC	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	372, 451
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	225, 417, 442
Cfr42I	CCGCGG	1 cut(s)	501
CviAII	CATG	7 cut(s)	55, 164, 202, 335, 383, 450, 518
CviJI	RGCY	9 cut(s)	136, 152, 191, 196, 254, 324, 370, 631, 638
CviKI_1	RGCY	9 cut(s)	136, 152, 191, 196, 254, 324, 370, 631, 638
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	8, 234, 389
DpnII	GATC	3 cut(s)	6, 232, 387
EaeI	YGGCCR	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	221
Eco47I	GGWCC	3 cut(s)	225, 417, 442
Eco57I	CTGAAG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	7 cut(s)	58, 167, 205, 338, 386, 453, 521
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 597, 629
FatI	CATG	7 cut(s)	54, 163, 201, 334, 382, 449, 517
FauI	CCCGC	1 cut(s)	493
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	375, 498
Fsp4HI	GCNGC	2 cut(s)	375, 498
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	375, 498
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	7 cut(s)	58, 167, 205, 338, 386, 453, 521
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	4 cut(s)	92, 146, 423, 568
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	5 cut(s)	28, 49, 73, 294, 533
Hpy188III	TCNNGA	4 cut(s)	236, 335, 359, 391
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	4 cut(s)	94, 356, 388, 621
HpyCH4III	ACNGT	2 cut(s)	208, 490
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	3 cut(s)	331, 449, 575
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	7 cut(s)	58, 167, 205, 338, 386, 453, 521
HspAI	GCGC	1 cut(s)	12
KspAI	GTTAAC	1 cut(s)	478
KspI	CCGCGG	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	6, 232, 387
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	9 cut(s)	28, 125, 173, 235, 249, 336, 433, 467, 585
LweI	GCATC	3 cut(s)	21, 118, 340
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	3 cut(s)	17, 76, 490
MalI	GATC	3 cut(s)	8, 234, 389
MboI	GATC	3 cut(s)	6, 232, 387
MboII	GAAGA	1 cut(s)	242
MflI	RGATCY	2 cut(s)	6, 232
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	2 cut(s)	168, 306
MluNI	TGGCCA	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	3 cut(s)	42, 72, 317
MnlI	CCTC	3 cut(s)	91, 408, 594
Mox20I	TGGCCA	1 cut(s)	136
Mph1103I	ATGCAT	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	136
MseI	TTAA	4 cut(s)	309, 477, 593, 615
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	500
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	3 cut(s)	6, 232, 387
NlaIII	CATG	7 cut(s)	58, 167, 205, 338, 386, 453, 521
NmuCI	GTSAC	3 cut(s)	17, 76, 490
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	2 cut(s)	453, 521
PaeI	GCATGC	1 cut(s)	453
PagI	TCATGA	1 cut(s)	334
PfeI	GAWTC	3 cut(s)	146, 423, 568
PkrI	GCNGC	2 cut(s)	376, 499
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	442
PshBI	ATTAAT	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	442
PspPI	GGNCC	3 cut(s)	225, 417, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	6, 232
RseI	CAYNNNNRTG	1 cut(s)	471
SacII	CCGCGG	1 cut(s)	501
SaqAI	TTAA	4 cut(s)	309, 477, 593, 615
SatI	GCNGC	2 cut(s)	375, 498
Sau3AI	GATC	3 cut(s)	6, 232, 387
Sau96I	GGNCC	3 cut(s)	225, 417, 442
SchI	GAGTC	1 cut(s)	101
SfaNI	GCATC	3 cut(s)	21, 118, 340
Sfr303I	CCGCGG	1 cut(s)	501
SgrBI	CCGCGG	1 cut(s)	501
SinI	GGWCC	3 cut(s)	225, 417, 442
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	2 cut(s)	168, 306
SsiI	CCGC	3 cut(s)	375, 498, 500
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	208, 490
TaiI	ACGT	1 cut(s)	600
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	2 cut(s)	168, 306
TauI	GCSGC	2 cut(s)	377, 500
TfiI	GAWTC	3 cut(s)	146, 423, 568
Tru1I	TTAA	4 cut(s)	309, 477, 593, 615
Tru9I	TTAA	4 cut(s)	309, 477, 593, 615
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	3 cut(s)	17, 76, 490
Tsp45I	GTSAC	3 cut(s)	17, 76, 490
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	3 cut(s)	225, 417, 442
VspI	ATTAAT	1 cut(s)	309
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	2 cut(s)	453, 521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XspI	CTAG	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.