Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

21734300 .. 21737349

Gene Structure 3050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAACAAGTTGTCAGCATTGCTTCCCCCCACAAATTCTTAGGTACTCCACTACTACGGATCATGGAATCATTAAAAATGGCTATCACCAAGCAGCCTGAGCGAAACAATGAAGTTGTGAAATCAAGCGATGCATTTGTTGCTCCTGATATCAATGCATTTGGCCAGTCATTCAGGCAGAAAGGTGTGGAGGAATTTTATCGTTTGAACCACATTAACCAAACGTATGATTTTGTAAAAAAGACGAGAGAGGCGTACAAAAAATTGGATAGAGTGCAAATGAGCATATGGGAATGCTGTGAGCTCCTGAATGAGGTTGTGGATGAGAGTGATCCGGATTCGGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGACAATTAGAAAAGACTATCCGAATGAAGATTGGCTGCACCTTACCGCTCTCATTCATGATCTCGGGAAAGTGCTTCTTCTTCCTAAATTTGGAGGACTTCCTCAATGGGCTGTTGTTGGAGACACACTTCCTTTTGGGTGCGCTTTTGATGAATCCATCATTCACCACAAGGACAATCCGGATTCCAAAAATCATGCGTACAACACCAAGAATGGAATTTACAAAGAAGGATGTGGACTAGAAAATGTGATGATCTCATGGGGTCATGATGATTACATGTACATGGTTGCCAAGGAAAATGGGACAACTTTGCCAGAGGCTGGATTGTTTGTTATCCGGTATCACTCATTTTATCCTCTACACAAGGCAGGGGCATATACACACCTAATGATCGAACAAGGAAGACAAAGAGAATATGAAATGAGCAAGAGCAAAGTTCAAGTTGATGTCGACAAGGTCAAGTCTTATACTATTTATCCCTTATTAACAAATACTTTCCCATTTTGTATGGAATGCCAACACACCAAGTTGATCAAAACTTGTACCTACAACTTCTCAGCAAAGCTAAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

318

Amino Acids

36.71

Weight (kDa)

6.36

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	61 - 284	3.9e-97	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	701
AccBSI	CCGCTC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	831
AccIII	TCCGGA	2 cut(s)	334, 559
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	2 cut(s)	68, 326
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	5 cut(s)	35, 194, 354, 467, 597
AfaI	GTAC	5 cut(s)	46, 257, 581, 662, 925
AfiI	CCNNNNNNNGG	3 cut(s)	313, 470, 701
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	2 cut(s)	208, 821
AluBI	AGCT	3 cut(s)	304, 377, 946
AluI	AGCT	3 cut(s)	304, 377, 946
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	2 cut(s)	374, 495
AlwI	GGATC	2 cut(s)	68, 326
AlwNI	CAGNNNCTG	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	443
Aor13HI	TCCGGA	2 cut(s)	334, 559
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	94, 415
ApoI	RAATTY	5 cut(s)	35, 194, 354, 467, 597
AspLEI	GCGC	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	79, 536
AvaI	CYCGRG	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	790
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	106, 402
BccI	CCATC	1 cut(s)	545
BclI	TGATCA	1 cut(s)	912
BcoDI	GTCTC	2 cut(s)	374, 495
BfaI	CTAG	1 cut(s)	620
BisI	GCNGC	2 cut(s)	95, 416
BlsI	GCNGC	2 cut(s)	96, 417
BmeT110I	CYCGRG	1 cut(s)	443
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	790
Bpu10I	CCTNAGC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	3 cut(s)	334, 559, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 470, 701
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	18
BseAI	TCCGGA	2 cut(s)	334, 559
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	3 cut(s)	328, 349, 617
BseLI	CCNNNNNNNGG	3 cut(s)	313, 470, 701
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	3 cut(s)	90, 369, 951
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	106, 402
BsgI	GTGCAG	1 cut(s)	401
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	3 cut(s)	335, 560, 718
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	3 cut(s)	313, 470, 701
BsmAI	GTCTC	2 cut(s)	374, 495
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	2 cut(s)	299, 899
BsnI	GGCC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp13I	TCCGGA	2 cut(s)	334, 559
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	6 cut(s)	60, 331, 439, 633, 771, 912
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	3 cut(s)	91, 370, 950
BspEI	TCCGGA	2 cut(s)	334, 559
BspHI	TCATGA	2 cut(s)	436, 646
BspPI	GGATC	2 cut(s)	68, 326
BsrBI	CCGCTC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	6 cut(s)	60, 331, 439, 633, 771, 912
BssT1I	CCWWGG	1 cut(s)	672
BstAPI	GCANNNNNTGC	2 cut(s)	140, 367
BstAUI	TGTACA	1 cut(s)	660
BstDEI	CTNAG	4 cut(s)	40, 99, 378, 937
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	3 cut(s)	328, 349, 617
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	6 cut(s)	63, 334, 442, 636, 774, 915
BstMAI	GTCTC	2 cut(s)	374, 495
BstMBI	GATC	6 cut(s)	60, 331, 439, 633, 771, 912
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 140, 367
BstNSI	RCATGY	1 cut(s)	661
BstV1I	GCAGC	2 cut(s)	106, 402
BstV2I	GAAGAC	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	328, 349, 617
CaiI	CAGNNNCTG	1 cut(s)	701
CciI	TCATGA	2 cut(s)	436, 646
CfoI	GCGC	1 cut(s)	524
Csp6I	GTAC	5 cut(s)	45, 256, 580, 661, 924
CviAII	CATG	7 cut(s)	64, 437, 575, 639, 647, 658, 664
CviJI	RGCY	9 cut(s)	83, 97, 165, 304, 377, 415, 491, 701, 946
CviKI_1	RGCY	9 cut(s)	83, 97, 165, 304, 377, 415, 491, 701, 946
CviQI	GTAC	5 cut(s)	45, 256, 580, 661, 924
DdeI	CTNAG	4 cut(s)	40, 99, 378, 937
DpnI	GATC	6 cut(s)	62, 333, 441, 635, 773, 914
DpnII	GATC	6 cut(s)	60, 331, 439, 633, 771, 912
EaeI	YGGCCR	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	306
Eco32I	GATATC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	304
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	2 cut(s)	136, 160
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	7 cut(s)	67, 440, 578, 642, 650, 661, 667
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	7 cut(s)	63, 436, 574, 638, 646, 657, 663
FauNDI	CATATG	1 cut(s)	287
FbaI	TGATCA	1 cut(s)	912
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	2 cut(s)	95, 416
FokI	GGATG	3 cut(s)	335, 356, 624
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	95, 416
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	2 cut(s)	95, 416
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	3 cut(s)	335, 560, 718
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	7 cut(s)	67, 440, 578, 642, 650, 661, 667
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HinfI	GANTC	4 cut(s)	68, 338, 533, 563
HpaII	CCGG	3 cut(s)	335, 560, 718
HphI	GGTGA	2 cut(s)	79, 536
Hpy166II	GTNNAC	2 cut(s)	617, 832
Hpy188I	TCNGA	2 cut(s)	343, 402
Hpy188III	TCNNGA	7 cut(s)	146, 307, 335, 437, 445, 560, 647
Hpy8I	GTNNAC	2 cut(s)	617, 832
HpyAV	CCTTC	1 cut(s)	602
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	5 cut(s)	134, 158, 277, 370, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 140, 367
HpyF3I	CTNAG	4 cut(s)	40, 99, 378, 937
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	7 cut(s)	67, 440, 578, 642, 650, 661, 667
HspAI	GCGC	1 cut(s)	522
Kpn2I	TCCGGA	2 cut(s)	334, 559
Ksp22I	TGATCA	1 cut(s)	912
Kzo9I	GATC	6 cut(s)	60, 331, 439, 633, 771, 912
LmnI	GCTCC	2 cut(s)	148, 309
Lsp1109I	GCAGC	2 cut(s)	106, 402
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	1 cut(s)	224
MalI	GATC	6 cut(s)	62, 333, 441, 635, 773, 914
MbiI	CCGCTC	1 cut(s)	428
MboI	GATC	6 cut(s)	60, 331, 439, 633, 771, 912
MboII	GAAGA	4 cut(s)	419, 449, 452, 795
MhlI	GDGCHC	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	7 cut(s)	35, 194, 263, 354, 384, 467, 597
MluNI	TGGCCA	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	7 cut(s)	184, 244, 307, 467, 492, 691, 747
Mox20I	TGGCCA	1 cut(s)	165
Mph1103I	ATGCAT	2 cut(s)	136, 160
MroI	TCCGGA	2 cut(s)	334, 559
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	3 cut(s)	74, 216, 866
MslI	CAYNNNNRTG	1 cut(s)	662
Msp20I	TGGCCA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	3 cut(s)	335, 560, 718
Mva1269I	GAATGC	2 cut(s)	299, 899
MwoI	GCNNNNNNNGC	3 cut(s)	100, 140, 367
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	6 cut(s)	60, 331, 439, 633, 771, 912
NlaIII	CATG	7 cut(s)	67, 440, 578, 642, 650, 661, 667
NsiI	ATGCAT	2 cut(s)	136, 160
NspI	RCATGY	1 cut(s)	661
PagI	TCATGA	2 cut(s)	436, 646
PciI	ACATGT	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PctI	GAATGC	2 cut(s)	299, 899
PfeI	GAWTC	4 cut(s)	68, 338, 533, 563
PflFI	GACNNNGTC	1 cut(s)	836
PflMI	CCANNNNNTGG	1 cut(s)	701
PkrI	GCNGC	2 cut(s)	96, 417
PscI	ACATGT	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	701
PsyI	GACNNNGTC	1 cut(s)	836
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	5 cut(s)	46, 257, 581, 662, 925
RsaNI	GTAC	5 cut(s)	45, 256, 580, 661, 924
RseI	CAYNNNNRTG	1 cut(s)	662
SacI	GAGCTC	1 cut(s)	306
SalI	GTCGAC	1 cut(s)	830
SaqAI	TTAA	3 cut(s)	74, 216, 866
SatI	GCNGC	2 cut(s)	95, 416
Sau3AI	GATC	6 cut(s)	60, 331, 439, 633, 771, 912
SduI	GDGCHC	1 cut(s)	306
SfaNI	GCATC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	662
Sse9I	AATT	7 cut(s)	35, 194, 263, 354, 384, 467, 597
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	1 cut(s)	620
SstI	GAGCTC	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	672
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	774, 831
TasI	AATT	7 cut(s)	35, 194, 263, 354, 384, 467, 597
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	4 cut(s)	68, 338, 533, 563
Tru1I	TTAA	3 cut(s)	74, 216, 866
Tru9I	TTAA	3 cut(s)	74, 216, 866
TseI	GCWGC	2 cut(s)	94, 415
TspDTI	ATGAA	7 cut(s)	17, 126, 360, 420, 425, 546, 813
TspGWI	ACGGA	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	836
Van91I	CCANNNNNTGG	1 cut(s)	701
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	5 cut(s)	35, 194, 354, 467, 597
XceI	RCATGY	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	831
XspI	CTAG	1 cut(s)	620
Zsp2I	ATGCAT	2 cut(s)	136, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.