Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00572

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

46761 .. 48403

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCATCACCAAGCAGTCTGAGCGAAACAATGAAGTCGTGAAATCAAGCGATGCATTTGTTGCTCCTGAAATCAATGCATTTGGCCAGTCATTCAGGGATTATAATGCAGAAAGTGAGAGGCAGAAAGGTGTGGAGGAATTTTATCGTTTGAACCACATTAACCAAACGTATGATTTTGTGAAAAAGACGAGAGAGGAGTACAAAAAATTGGATAGAGTGGAAATGAGCATATGGGAATGCTGTGAGCTCCTGAATGAGGTTGTGGATGAGAGTGACCCGGATTTAGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGGCAATTAGAAAAGACTATCCGAATGAAGATTGGCTGCACCTTACCGCTCTCGTTCATGATCTCGGGAAAGTGCTTCTTCTTCCTAAGTTTGGAGGACTTCCTCAATGGGCTGTTGTTGGAGACACACATCCTCTTGGGTGCGCTTTTGATGAATCCATCGTTCACCACAAGTACTTCAAGGACAATCCGGATTCCAAAAATCCTGCGTACAACACCAAGAATGGAATTTACAAAGAAGGATGTGGACTAGAAAATGTGATGATCTCATGGGGTCATGATGACTACATGTACATGGTTGCCAAGGAAAATGGGACAACTTTGCCTGAGGCTGGATTGTTTGTTATACGGTATCACTCATTTTATCCTCTACACAAGGCAGGGGCATATACACACCTAATGAACAAGGAAGACAGAGAGAATATGAAGTGGCTTCATATTTTTAACAAATATGACCTCTACAGCAAGAGCAAAGTTCAAGTTGATGTCGACAAGGTCAAGCCTTACTATTTATCCCTTATTAACAAGTACTTCCCAGCAAAGCTAAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

292

Amino Acids

34.12

Weight (kDa)

5.76

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	43 - 292	1e-125	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AccBSI	CCGCTC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	813
AccIII	TCCGGA	1 cut(s)	514
AciI	CCGC	1 cut(s)	372
AcoI	YGGCCR	2 cut(s)	3, 85
AcsI	RAATTY	3 cut(s)	140, 300, 552
AfaI	GTAC	5 cut(s)	203, 500, 536, 617, 854
AfiI	CCNNNNNNNGG	3 cut(s)	259, 416, 656
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	3 cut(s)	154, 505, 803
AluBI	AGCT	3 cut(s)	250, 323, 868
AluI	AGCT	3 cut(s)	250, 323, 868
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	514
AoxI	GGCC	2 cut(s)	3, 85
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	3 cut(s)	140, 300, 552
AspLEI	GCGC	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	651
BalI	TGGCCA	2 cut(s)	5, 87
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	14, 491
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	784
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
BmcAI	AGTACT	2 cut(s)	500, 854
Bme1390I	CCNGG	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 416, 656
Bse1I	ACTGG	1 cut(s)	88
Bse21I	CCTNAGG	1 cut(s)	651
BseAI	TCCGGA	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	3 cut(s)	274, 454, 572
BseLI	CCNNNNNNNGG	3 cut(s)	259, 416, 656
BseMII	CTCAG	3 cut(s)	12, 315, 642
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	859
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	5, 87
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	281, 515
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	3 cut(s)	259, 416, 656
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	652
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	5, 87
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp13I	TCCGGA	1 cut(s)	514
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	385, 588
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	2 cut(s)	5, 87
BspCNI	CTCAG	3 cut(s)	13, 316, 643
BspEI	TCCGGA	1 cut(s)	514
BspHI	TCATGA	2 cut(s)	382, 601
BsrBI	CCGCTC	1 cut(s)	374
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	2 cut(s)	385, 588
BssT1I	CCWWGG	1 cut(s)	627
Bst4CI	ACNGT	1 cut(s)	675
BstAPI	GCANNNNNTGC	2 cut(s)	62, 313
BstAUI	TGTACA	1 cut(s)	615
BstDEI	CTNAG	4 cut(s)	21, 324, 411, 651
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	274, 454, 572
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	2 cut(s)	388, 591
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	2 cut(s)	385, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 62, 313
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	784
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	5, 87
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	274, 454, 572
CciI	TCATGA	2 cut(s)	382, 601
CfoI	GCGC	1 cut(s)	470
Csp6I	GTAC	5 cut(s)	202, 499, 535, 616, 853
CviAII	CATG	5 cut(s)	383, 594, 602, 613, 619
CviQI	GTAC	5 cut(s)	202, 499, 535, 616, 853
DdeI	CTNAG	4 cut(s)	21, 324, 411, 651
DpnI	GATC	2 cut(s)	387, 590
DpnII	GATC	2 cut(s)	385, 588
EaeI	YGGCCR	2 cut(s)	3, 85
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	627
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	627
EcoT22I	ATGCAT	2 cut(s)	58, 82
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	5 cut(s)	386, 597, 605, 616, 622
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	5 cut(s)	382, 593, 601, 612, 618
FauNDI	CATATG	1 cut(s)	233
FblI	GTMKAC	1 cut(s)	813
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	3 cut(s)	281, 441, 579
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	1 cut(s)	362
GsaI	CCCAGC	1 cut(s)	863
HaeIII	GGCC	2 cut(s)	5, 87
HapII	CCGG	2 cut(s)	281, 515
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	5 cut(s)	386, 597, 605, 616, 622
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	2 cut(s)	479, 518
HpaII	CCGG	2 cut(s)	281, 515
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	3 cut(s)	490, 572, 814
Hpy188I	TCNGA	2 cut(s)	22, 348
Hpy188III	TCNNGA	7 cut(s)	40, 68, 253, 383, 391, 515, 602
Hpy8I	GTNNAC	3 cut(s)	490, 572, 814
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	1 cut(s)	675
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	5 cut(s)	56, 80, 110, 316, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 62, 313
HpyF3I	CTNAG	4 cut(s)	21, 324, 411, 651
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	386, 597, 605, 616, 622
HspAI	GCGC	1 cut(s)	468
Kpn2I	TCCGGA	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	385, 588
LmnI	GCTCC	2 cut(s)	70, 255
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	387, 590
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	2 cut(s)	385, 588
MboII	GAAGA	4 cut(s)	365, 395, 398, 746
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	2 cut(s)	5, 87
MluCI	AATT	5 cut(s)	140, 209, 300, 330, 552
MluNI	TGGCCA	2 cut(s)	5, 87
MmeI	TCCRAC	1 cut(s)	424
Mox20I	TGGCCA	2 cut(s)	5, 87
Mph1103I	ATGCAT	2 cut(s)	58, 82
MroI	TCCGGA	1 cut(s)	514
MscI	TGGCCA	2 cut(s)	5, 87
MseI	TTAA	3 cut(s)	162, 768, 846
MslI	CAYNNNNRTG	1 cut(s)	617
Msp20I	TGGCCA	2 cut(s)	5, 87
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	2 cut(s)	281, 515
MspR9I	CCNGG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	22, 62, 313
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	2 cut(s)	385, 588
NlaIII	CATG	5 cut(s)	386, 597, 605, 616, 622
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	2 cut(s)	58, 82
NspI	RCATGY	1 cut(s)	616
PagI	TCATGA	2 cut(s)	382, 601
PciI	ACATGT	1 cut(s)	612
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	479, 518
PflFI	GACNNNGTC	1 cut(s)	818
PkrI	GCNGC	1 cut(s)	363
PscI	ACATGT	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	859
PsyI	GACNNNGTC	1 cut(s)	818
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	5 cut(s)	203, 500, 536, 617, 854
RsaNI	GTAC	5 cut(s)	202, 499, 535, 616, 853
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	812
SaqAI	TTAA	3 cut(s)	162, 768, 846
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	2 cut(s)	385, 588
ScaI	AGTACT	2 cut(s)	500, 854
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	784
SmiMI	CAYNNNNRTG	1 cut(s)	617
Sse9I	AATT	5 cut(s)	140, 209, 300, 330, 552
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	1 cut(s)	575
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	1 cut(s)	675
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	813
TasI	AATT	5 cut(s)	140, 209, 300, 330, 552
TatI	WGTACW	4 cut(s)	201, 498, 615, 852
TfiI	GAWTC	2 cut(s)	479, 518
Tru1I	TTAA	3 cut(s)	162, 768, 846
Tru9I	TTAA	3 cut(s)	162, 768, 846
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	8 cut(s)	48, 306, 366, 371, 492, 740, 749, 764
Tth111I	GACNNNGTC	1 cut(s)	818
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	3 cut(s)	140, 300, 552
XceI	RCATGY	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	813
XspI	CTAG	1 cut(s)	575
ZrmI	AGTACT	2 cut(s)	500, 854
Zsp2I	ATGCAT	2 cut(s)	58, 82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.