Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

3490954 .. 3493389

Gene Structure 2436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06630.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACTATCCTCATTGAGCAACCAGATGTTAATGTGCCACAATGGGAGGAGACGAAGGTTTTGGCTCCTGAGAACAATGAAGAAATGTGTGATCAATTGGTATTGGATGGTGGGTTTGTGATGCCAAAAGAAATAGCCGACAACGATGGATGTGTGAAACCAGAACTTCTTGTGTCAAATGATGAGTTCATTGCCCCTGACATCAATGCATTTGGCCAGACATTCAGGGATTATAATGCAGAAAGTGAGAGGCAGAAAAGTGTGGAGGAATTCTATAGGTTGAATCACATTCATCAGACGTATGATTTTGTGAAGAAGATGAGGGAGGCGTACAGGAAGATGGATAGAGTGGAAATGAGCATTTGGGAATGCTGTGAGCTCCTTAATGAGGTCGTGGATGAAAGTGATCCTGACTTGGATGAACCGCAAATCGAGCATTTGCTGCAGACAGCTGAAGCAATTAGGAAAGACTATCCTAATGAAGATTGGCTGCATTTGACTGCTCTTATTCATGATCTTGGAAAAGTGCTTCTTCTTCCTAGCTTTGGAGGGCTTCCTCAATGGGCTGTAGTTGGAGACACACATCCTCTTGGTTGTGCTTTTGATGAATCCATTGTTCACCACAAGTATTTCGAGGGCAATCCGGATCACAATAACCCTTTGTACAACACTAAGAACGGAATTTACTCTGAAGGCTGTGGACTAGAAAATGTCATGATTTCATGGGGACATGATGACTACATGTACTTGGTGGCCAAGGAAAATGGTACCACTTTGCCTGAAGCTGGATTGTTTGTTATCCGCTATCACTCTTTCTATCCTCTTCACAAGTCAGGGGCATATAAACATTTAATGAACGAGGAGGATAAAGAGAACTTGAAGTGGCTCAACATCTTCAACAAATATGATCTCTACAGCAAGAGCAAGGTTCGAGTTGATGTCAAAAAAGTCAAGCCTTACTATTTATCTCTTATTGACAAGTATTTCCCAGCAAAGCTGAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

336

Amino Acids

39.02

Weight (kDa)

4.88

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	86 - 328	5.2e-122	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
Acc65I	GGTACC	1 cut(s)	767
AccB1I	GGYRCC	1 cut(s)	767
AccIII	TCCGGA	1 cut(s)	643
AciI	CCGC	2 cut(s)	425, 802
AclWI	GGATC	2 cut(s)	401, 654
AcoI	YGGCCR	2 cut(s)	214, 753
AcsI	RAATTY	2 cut(s)	269, 681
AcuI	CTGAAG	3 cut(s)	474, 711, 801
AfaI	GTAC	4 cut(s)	332, 665, 746, 769
AfiI	CCNNNNNNNGG	3 cut(s)	388, 545, 785
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	3 cut(s)	283, 880, 898
AluBI	AGCT	5 cut(s)	379, 452, 543, 785, 997
AluI	AGCT	5 cut(s)	379, 452, 543, 785, 997
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	44, 570
AlwI	GGATC	2 cut(s)	401, 654
Aor13HI	TCCGGA	1 cut(s)	643
AoxI	GGCC	2 cut(s)	214, 753
ApeKI	GCWGC	2 cut(s)	442, 490
ApoI	RAATTY	2 cut(s)	269, 681
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
Asp718I	GGTACC	1 cut(s)	767
AsuHPI	GGTGA	1 cut(s)	611
BalI	TGGCCA	2 cut(s)	216, 755
BanI	GGYRCC	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	429, 477
BccI	CCATC	4 cut(s)	101, 140, 334, 996
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	44, 570
BfaI	CTAG	2 cut(s)	540, 704
BfmI	CTRYAG	4 cut(s)	274, 443, 567, 913
BisI	GCNGC	2 cut(s)	443, 491
BlsI	GCNGC	2 cut(s)	444, 492
BmiI	GGNNCC	2 cut(s)	66, 769
BmsI	GCATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	756
BsaWI	WCCGGW	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 545, 785
Bse3DI	GCAATG	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	643
BseDI	CCNNGG	1 cut(s)	756
BseGI	GGATG	5 cut(s)	112, 155, 403, 424, 583
BseLI	CCNNNNNNNGG	3 cut(s)	388, 545, 785
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	60, 989
BseRI	GAGGAG	2 cut(s)	62, 875
BseXI	GCAGC	2 cut(s)	429, 477
BseYI	CCCAGC	1 cut(s)	988
BshFI	GGCC	2 cut(s)	216, 755
BshNI	GGYRCC	1 cut(s)	767
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	741
BslI	CCNNNNNNNGG	3 cut(s)	388, 545, 785
BsmAI	GTCTC	2 cut(s)	44, 570
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	741
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	216, 755
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	643
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	5 cut(s)	91, 406, 514, 646, 907
BspACI	CCGC	2 cut(s)	425, 802
BspANI	GGCC	2 cut(s)	216, 755
BspCNI	CTCAG	2 cut(s)	61, 990
BspEI	TCCGGA	1 cut(s)	643
BspHI	TCATGA	2 cut(s)	511, 714
BspLI	GGNNCC	2 cut(s)	66, 769
BspMAI	CTGCAG	1 cut(s)	447
BspPI	GGATC	2 cut(s)	401, 654
BspT107I	GGYRCC	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	663
BssECI	CCNNGG	1 cut(s)	756
BssMI	GATC	5 cut(s)	91, 406, 514, 646, 907
BssT1I	CCWWGG	1 cut(s)	756
Bst6I	CTCTTC	1 cut(s)	828
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstAUI	TGTACA	1 cut(s)	663
BstDEI	CTNAG	3 cut(s)	69, 672, 998
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	5 cut(s)	112, 155, 403, 424, 583
BstKTI	GATC	5 cut(s)	94, 409, 517, 649, 910
BstMAI	GTCTC	2 cut(s)	44, 570
BstMBI	GATC	5 cut(s)	91, 406, 514, 646, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 442
BstNSI	RCATGY	1 cut(s)	745
BstSFI	CTRYAG	4 cut(s)	274, 443, 567, 913
BstV1I	GCAGC	2 cut(s)	429, 477
BsuRI	GGCC	2 cut(s)	216, 755
BtsCI	GGATG	5 cut(s)	112, 155, 403, 424, 583
CciI	TCATGA	2 cut(s)	511, 714
Csp6I	GTAC	4 cut(s)	331, 664, 745, 768
CviAII	CATG	5 cut(s)	512, 715, 723, 731, 742
CviQI	GTAC	4 cut(s)	331, 664, 745, 768
DdeI	CTNAG	3 cut(s)	69, 672, 998
DpnI	GATC	5 cut(s)	93, 408, 516, 648, 909
DpnII	GATC	5 cut(s)	91, 406, 514, 646, 907
EaeI	YGGCCR	2 cut(s)	214, 753
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	3 cut(s)	474, 711, 801
EcoICRI	GAGCTC	1 cut(s)	379
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	756
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	756
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	5 cut(s)	515, 718, 726, 734, 745
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	741
FatI	CATG	5 cut(s)	511, 714, 722, 730, 741
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	443, 491
FokI	GGATG	5 cut(s)	119, 162, 410, 431, 570
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	443, 491
FspBI	CTAG	2 cut(s)	540, 704
GluI	GCNGC	2 cut(s)	443, 491
GsaI	CCCAGC	1 cut(s)	992
HaeIII	GGCC	2 cut(s)	216, 755
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	5 cut(s)	515, 718, 726, 734, 745
HinfI	GANTC	2 cut(s)	283, 608
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	619, 701
Hpy188I	TCNGA	2 cut(s)	297, 691
Hpy188III	TCNNGA	5 cut(s)	68, 410, 512, 644, 715
Hpy8I	GTNNAC	2 cut(s)	619, 701
HpyAV	CCTTC	2 cut(s)	49, 686
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	4 cut(s)	209, 239, 445, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 442
HpyF3I	CTNAG	3 cut(s)	69, 672, 998
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	5 cut(s)	515, 718, 726, 734, 745
Kpn2I	TCCGGA	1 cut(s)	643
KpnI	GGTACC	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	5 cut(s)	91, 406, 514, 646, 907
LmnI	GCTCC	2 cut(s)	70, 384
Lsp1109I	GCAGC	2 cut(s)	429, 477
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	2 cut(s)	540, 704
MaeII	ACGT	1 cut(s)	299
MalI	GATC	5 cut(s)	93, 408, 516, 648, 909
MboI	GATC	5 cut(s)	91, 406, 514, 646, 907
MboII	GAAGA	9 cut(s)	92, 325, 328, 349, 494, 524, 527, 815, 886
MfeI	CAATTG	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	2 cut(s)	216, 755
MluCI	AATT	4 cut(s)	95, 269, 459, 681
MluNI	TGGCCA	2 cut(s)	216, 755
MmeI	TCCRAC	1 cut(s)	553
Mox20I	TGGCCA	2 cut(s)	216, 755
Mph1103I	ATGCAT	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	643
MscI	TGGCCA	2 cut(s)	216, 755
MseI	TTAA	3 cut(s)	30, 384, 851
Msp20I	TGGCCA	2 cut(s)	216, 755
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	644
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	433, 442
NdeII	GATC	5 cut(s)	91, 406, 514, 646, 907
NlaIII	CATG	5 cut(s)	515, 718, 726, 734, 745
NlaIV	GGNNCC	2 cut(s)	66, 769
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	745
PagI	TCATGA	2 cut(s)	511, 714
PciI	ACATGT	1 cut(s)	741
PctI	GAATGC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	283, 608
PkrI	GCNGC	2 cut(s)	444, 492
PscI	ACATGT	1 cut(s)	741
PsiI	TTATAA	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	988
PspN4I	GGNNCC	2 cut(s)	66, 769
PsrI	GAACNNNNNNTAC	2 cut(s)	668, 700
PstI	CTGCAG	1 cut(s)	447
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	4 cut(s)	332, 665, 746, 769
RsaNI	GTAC	4 cut(s)	331, 664, 745, 768
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	30, 384, 851
SatI	GCNGC	2 cut(s)	443, 491
Sau3AI	GATC	5 cut(s)	91, 406, 514, 646, 907
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	111
SfcI	CTRYAG	4 cut(s)	274, 443, 567, 913
Sse9I	AATT	4 cut(s)	95, 269, 459, 681
SsiI	CCGC	2 cut(s)	425, 802
SspMI	CTAG	2 cut(s)	540, 704
SstI	GAGCTC	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	756
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	3 cut(s)	432, 633, 931
TasI	AATT	4 cut(s)	95, 269, 459, 681
TatI	WGTACW	2 cut(s)	663, 744
TfiI	GAWTC	2 cut(s)	283, 608
Tru1I	TTAA	3 cut(s)	30, 384, 851
Tru9I	TTAA	3 cut(s)	30, 384, 851
TseI	GCWGC	2 cut(s)	442, 490
TspGWI	ACGGA	1 cut(s)	693
XagI	CCTNNNNNAGG	1 cut(s)	386
XapI	RAATTY	2 cut(s)	269, 681
XceI	RCATGY	1 cut(s)	745
XspI	CTAG	2 cut(s)	540, 704
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.