Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Forward (+)

45733004 .. 45734323

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTATCACCAAGCAGCCTGAGCGAAACAATGAAGTCGTGAAATCAAGCGATGCATTTGTTGCTCTTGAAATCAATGCATTTGGCCAGTCATTCAGGGATTATAATGCAGAAAGTGAGAGGCAGAAAGGTGTGGAGGAATTTTATCGTTTGAACCACATTAACCAAACATATGATTTTGTAAAAAAGACGAAAGAGGAGTACAAAAAATTGGATAGAGTGGAAATGAGCATATGGGAATGTTGTGAGCTCCTGAATGAGCTTCCCGCTCTCATTCATGATCTCGGGAAAGTGCTTCTTCTTCCTAAATTTGGAGGACTTCCTCAATGGGCTGTTGTTGGAGACACACATCCTCTTGGGTGCGCTTTTGATGAATCCATCGTTCACCACAAGTACTTCAAGGACAATCCTGATTCCAAAAATCCTGCGTACAACACCAAGAAGGGAATTTACAAAGAAGGATGTGGACTAGAAAATGTGATGATCTCATGGGGTCATGATGACTACATGTACATGGTTGCCAAGGAAAATGGGACAACTTTGCCAGAGGCTGGATTGTTTGTTATACGGTATCACTCATTTTATCCACTACACAAGGCAGGGGCATATACACACCCAATGAACAAGGAAGACAGAGAGAATATGAAGTGGCTTCATATTTTTAACAAATATGACCTCTACAGCAAGAGCAAAGTTCAAGTTGATGTCGACAAGGTCAAGCCTTACTATTTATCCCTTATTAACAAGTACTTCCCAGCAAAGCTAAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

257

Amino Acids

30.01

Weight (kDa)

7.14

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	43 - 88	3.9e-11	Myo-inositol oxygenase
MIOX	PF05153	88 - 257	7e-83	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AccB7I	CCANNNNNTGG	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	3 cut(s)	140, 308, 447
AfaI	GTAC	5 cut(s)	203, 395, 431, 512, 749
AfiI	CCNNNNNNNGG	2 cut(s)	311, 551
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	4 cut(s)	71, 154, 400, 698
AluBI	AGCT	3 cut(s)	250, 262, 763
AluI	AGCT	3 cut(s)	250, 262, 763
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	336
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	3 cut(s)	140, 308, 447
AspLEI	GCGC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	252
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	679
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
BmcAI	AGTACT	2 cut(s)	395, 749
BmeT110I	CYCGRG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 551
Bse1I	ACTGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	2 cut(s)	349, 467
BseLI	CCNNNNNNNGG	2 cut(s)	311, 551
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	28
BseYI	CCCAGC	1 cut(s)	754
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	311, 551
BsmAI	GTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	280, 483
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	13
BspHI	TCATGA	2 cut(s)	277, 496
BsrBI	CCGCTC	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	2 cut(s)	280, 483
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstAUI	TGTACA	1 cut(s)	510
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	349, 467
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	2 cut(s)	283, 486
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	2 cut(s)	280, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 62
BstNSI	RCATGY	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	636
BsuRI	GGCC	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	349, 467
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	2 cut(s)	277, 496
CfoI	GCGC	1 cut(s)	365
Csp6I	GTAC	5 cut(s)	202, 394, 430, 511, 748
CviAII	CATG	5 cut(s)	278, 489, 497, 508, 514
CviQI	GTAC	5 cut(s)	202, 394, 430, 511, 748
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	282, 485
DpnII	GATC	2 cut(s)	280, 483
EaeI	YGGCCR	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	2 cut(s)	58, 82
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	5 cut(s)	281, 492, 500, 511, 517
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	5 cut(s)	277, 488, 496, 507, 513
FauI	CCCGC	1 cut(s)	274
FauNDI	CATATG	2 cut(s)	172, 233
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	2 cut(s)	336, 474
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	17
GsaI	CCCAGC	1 cut(s)	758
HaeIII	GGCC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	5 cut(s)	281, 492, 500, 511, 517
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	2 cut(s)	374, 413
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	3 cut(s)	385, 467, 709
Hpy188III	TCNNGA	7 cut(s)	40, 68, 253, 278, 286, 410, 497
Hpy8I	GTNNAC	3 cut(s)	385, 467, 709
HpyAV	CCTTC	2 cut(s)	436, 452
HpyCH4III	ACNGT	1 cut(s)	570
HpyCH4V	TGCA	3 cut(s)	56, 80, 110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 62
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	281, 492, 500, 511, 517
HspAI	GCGC	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	280, 483
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	470
MalI	GATC	2 cut(s)	282, 485
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	2 cut(s)	280, 483
MboII	GAAGA	3 cut(s)	290, 293, 641
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	4 cut(s)	140, 209, 308, 447
MluNI	TGGCCA	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	8 cut(s)	114, 130, 190, 308, 333, 363, 541, 686
Mox20I	TGGCCA	1 cut(s)	87
Mph1103I	ATGCAT	2 cut(s)	58, 82
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	3 cut(s)	162, 663, 741
MslI	CAYNNNNRTG	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	22, 62
NdeI	CATATG	2 cut(s)	172, 233
NdeII	GATC	2 cut(s)	280, 483
NlaIII	CATG	5 cut(s)	281, 492, 500, 511, 517
NsiI	ATGCAT	2 cut(s)	58, 82
NspI	RCATGY	1 cut(s)	511
PagI	TCATGA	2 cut(s)	277, 496
PciI	ACATGT	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	374, 413
PflFI	GACNNNGTC	1 cut(s)	713
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	1 cut(s)	18
PscI	ACATGT	1 cut(s)	507
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	754
PstNI	CAGNNNCTG	1 cut(s)	551
PsyI	GACNNNGTC	1 cut(s)	713
RsaI	GTAC	5 cut(s)	203, 395, 431, 512, 749
RsaNI	GTAC	5 cut(s)	202, 394, 430, 511, 748
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	707
SaqAI	TTAA	3 cut(s)	162, 663, 741
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	2 cut(s)	280, 483
ScaI	AGTACT	2 cut(s)	395, 749
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	6 cut(s)	133, 252, 264, 678, 717, 765
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	679
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	4 cut(s)	140, 209, 308, 447
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	1 cut(s)	470
SstI	GAGCTC	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	570
TaqI	TCGA	1 cut(s)	708
TasI	AATT	4 cut(s)	140, 209, 308, 447
TatI	WGTACW	4 cut(s)	201, 393, 510, 747
TfiI	GAWTC	2 cut(s)	374, 413
Tru1I	TTAA	3 cut(s)	162, 663, 741
Tru9I	TTAA	3 cut(s)	162, 663, 741
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	6 cut(s)	48, 266, 387, 635, 644, 659
Tth111I	GACNNNGTC	1 cut(s)	713
Van91I	CCANNNNNTGG	1 cut(s)	551
XapI	RAATTY	3 cut(s)	140, 308, 447
XceI	RCATGY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	708
XspI	CTAG	1 cut(s)	470
ZrmI	AGTACT	2 cut(s)	395, 749
Zsp2I	ATGCAT	2 cut(s)	58, 82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.