Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

21680991 .. 21684924

Gene Structure 3934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACACGTGTCAAATTATTATTAGTGGAACAGGCAATGCATTTGTTGCTCGTGATATATATCAATGCATTTGGCCAGTCATTCAGGGATTATAATGCAGAAAGTGAGAGGCAGAAAGGTGTGGAGAAATTTTATTGTTTGAACCACATTAACCAAACGTATGATTTTGTTGTGGATGAGAGTGACCCGGATTTGGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGGCAATTAGAAAAGACTATCCGAATGAAGATTGGCTTCACCTTACCACTGCACTCTCATTCATGATCTCGGGAAAGTGCTTCTTCTTCCAAAATTTGGAGGATTTCCTCAATGGGCTGTTATTGGAGACACACATCGATCCTCTTGGGTGCGCTTTTGATGAATCCATCGACAATCCGGATTCCAAAAATCATGCGTACAACACCAAGAATGGAATTTACAAAGAAGGATGTGGACTAGAAAATGTGATGATCTCATGGGGTCATGATGATTACATGTACATGGTTGCCAAGGAAAATGGGACAACTTTGCCAGAGGCTGGATTGTTTGTTATCCGGTATCACTCATTTTATCCTCTACACAAGGCAGGGGCATATACACACCTAATGATCGAACAAGGAAGACAAAGAGAATATGAAATGAGCAAGAGCAAAGTTCAAGTTGATGTCGACAAGGTCAAGTCTTATACTATTTATCCCTTATTAACAAATACTTTCCCATTTTGTATGGAATGCCAACACACCAAGTTGATCAAAACTTGTACCTACAACTTCTCAGCAAAGCTAAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

268

Amino Acids

31.2

Weight (kDa)

5.43

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	54 - 234	3.9e-56	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AccB7I	CCANNNNNTGG	2 cut(s)	328, 551
AccI	GTMKAC	1 cut(s)	681
AccIII	TCCGGA	1 cut(s)	409
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	4 cut(s)	128, 207, 325, 447
AcvI	CACGTG	1 cut(s)	8
AfaI	GTAC	3 cut(s)	431, 512, 775
AfiI	CCNNNNNNNGG	3 cut(s)	193, 328, 551
AflIII	ACRYGT	3 cut(s)	5, 7, 507
AgsI	TTSAA	2 cut(s)	142, 671
AluBI	AGCT	2 cut(s)	230, 796
AluI	AGCT	2 cut(s)	230, 796
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	365
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	301
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	1 cut(s)	73
ApoI	RAATTY	4 cut(s)	128, 207, 325, 447
AspLEI	GCGC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	75
BauI	CACGAG	1 cut(s)	50
BbrPI	CACGTG	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	640
BbvCI	CCTCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	762
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	188
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	2 cut(s)	409, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 328, 551
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	59
BseAI	TCCGGA	1 cut(s)	409
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	3 cut(s)	181, 202, 467
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	3 cut(s)	193, 328, 551
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	222, 801
BseNI	ACTGG	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	75
BshVI	ATCGAT	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	3 cut(s)	188, 410, 568
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	3 cut(s)	193, 328, 551
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	301
Bsp13I	TCCGGA	1 cut(s)	409
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	5 cut(s)	297, 370, 483, 621, 762
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	223, 800
BspDI	ATCGAT	1 cut(s)	369
BspEI	TCCGGA	1 cut(s)	409
BspHI	TCATGA	2 cut(s)	294, 496
BspPI	GGATC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	5 cut(s)	297, 370, 483, 621, 762
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	50
BstAPI	GCANNNNNTGC	2 cut(s)	46, 220
BstAUI	TGTACA	1 cut(s)	510
BstBAI	YACGTR	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	231, 787
BstF5I	GGATG	3 cut(s)	181, 202, 467
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	5 cut(s)	300, 373, 486, 624, 765
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	5 cut(s)	297, 370, 483, 621, 762
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 220
BstNSI	RCATGY	1 cut(s)	511
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	640
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	181, 202, 467
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	2 cut(s)	294, 496
CfoI	GCGC	1 cut(s)	386
ClaI	ATCGAT	1 cut(s)	369
Csp6I	GTAC	3 cut(s)	430, 511, 774
CviAII	CATG	6 cut(s)	295, 425, 489, 497, 508, 514
CviJI	RGCY	6 cut(s)	75, 230, 268, 349, 551, 796
CviKI_1	RGCY	6 cut(s)	75, 230, 268, 349, 551, 796
CviQI	GTAC	3 cut(s)	430, 511, 774
DdeI	CTNAG	2 cut(s)	231, 787
DpnI	GATC	5 cut(s)	299, 372, 485, 623, 764
DpnII	GATC	5 cut(s)	297, 370, 483, 621, 762
EaeI	YGGCCR	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	522
Eco72I	CACGTG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	2 cut(s)	42, 70
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	6 cut(s)	298, 428, 492, 500, 511, 517
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 299, 331
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	6 cut(s)	294, 424, 488, 496, 507, 513
FbaI	TGATCA	1 cut(s)	762
FblI	GTMKAC	1 cut(s)	681
FokI	GGATG	3 cut(s)	188, 209, 474
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	3 cut(s)	188, 410, 568
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	6 cut(s)	298, 428, 492, 500, 511, 517
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	2 cut(s)	395, 413
HpaII	CCGG	3 cut(s)	188, 410, 568
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	2 cut(s)	467, 682
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	5 cut(s)	52, 295, 303, 410, 497
Hpy8I	GTNNAC	2 cut(s)	467, 682
HpyAV	CCTTC	1 cut(s)	452
HpyCH4IV	ACGT	2 cut(s)	7, 158
HpyCH4V	TGCA	5 cut(s)	40, 68, 98, 223, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 220
HpyF3I	CTNAG	2 cut(s)	231, 787
HpySE526I	ACGT	2 cut(s)	7, 158
Hsp92II	CATG	6 cut(s)	298, 428, 492, 500, 511, 517
HspAI	GCGC	1 cut(s)	384
Kpn2I	TCCGGA	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	762
Kzo9I	GATC	5 cut(s)	297, 370, 483, 621, 762
LpnPI	CCDG	9 cut(s)	17, 70, 89, 201, 423, 537, 558, 581, 585
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	2 cut(s)	7, 158
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	5 cut(s)	299, 372, 485, 623, 764
MboI	GATC	5 cut(s)	297, 370, 483, 621, 762
MboII	GAAGA	4 cut(s)	272, 307, 310, 645
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	6 cut(s)	14, 128, 207, 237, 325, 447
MluNI	TGGCCA	1 cut(s)	75
MnlI	CCTC	7 cut(s)	102, 226, 325, 350, 384, 541, 597
Mox20I	TGGCCA	1 cut(s)	75
Mph1103I	ATGCAT	2 cut(s)	42, 70
MroI	TCCGGA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	2 cut(s)	150, 716
MslI	CAYNNNNRTG	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	188, 410, 568
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	749
MwoI	GCNNNNNNNGC	2 cut(s)	46, 220
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	5 cut(s)	297, 370, 483, 621, 762
NlaIII	CATG	6 cut(s)	298, 428, 492, 500, 511, 517
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	2 cut(s)	42, 70
NspI	RCATGY	1 cut(s)	511
PagI	TCATGA	2 cut(s)	294, 496
PciI	ACATGT	1 cut(s)	507
PctI	GAATGC	1 cut(s)	749
PfeI	GAWTC	2 cut(s)	395, 413
PflFI	GACNNNGTC	1 cut(s)	686
PflMI	CCANNNNNTGG	2 cut(s)	328, 551
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	8
PscI	ACATGT	1 cut(s)	507
PshAI	GACNNNNGTC	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	93
PspCI	CACGTG	1 cut(s)	8
PstNI	CAGNNNCTG	1 cut(s)	551
PsyI	GACNNNGTC	1 cut(s)	686
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	3 cut(s)	431, 512, 775
RsaNI	GTAC	3 cut(s)	430, 511, 774
RseI	CAYNNNNRTG	1 cut(s)	512
SalI	GTCGAC	1 cut(s)	680
SaqAI	TTAA	2 cut(s)	150, 716
Sau3AI	GATC	5 cut(s)	297, 370, 483, 621, 762
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	9 cut(s)	10, 121, 161, 232, 276, 618, 690, 779, 798
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	6 cut(s)	14, 128, 207, 237, 325, 447
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	522
TaiI	ACGT	2 cut(s)	10, 161
TaqI	TCGA	4 cut(s)	369, 402, 624, 681
TasI	AATT	6 cut(s)	14, 128, 207, 237, 325, 447
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	2 cut(s)	395, 413
Tru1I	TTAA	2 cut(s)	150, 716
Tru9I	TTAA	2 cut(s)	150, 716
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	213, 273, 283, 408, 663
TspRI	CASTG	1 cut(s)	286
Tth111I	GACNNNGTC	1 cut(s)	686
Van91I	CCANNNNNTGG	2 cut(s)	328, 551
XapI	RAATTY	4 cut(s)	128, 207, 325, 447
XceI	RCATGY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	1 cut(s)	470
Zsp2I	ATGCAT	2 cut(s)	42, 70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.