Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007328.1

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

3391 .. 4983

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007328.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgactatcctcgttgagaagcctgaggtagtggccaaagtggaggaccagaatgaaaccagtgatttggtgttggatggtaggtttgtggtttcgaaagacgtagccggcaacgatgggtgtgtgaagcccgaagctttagtgtcgaacaatgagttcattacccctgaaatcaatgcatttggccagacattcagggaatacaatgcagagagtgaaaggcagaaaggtgtggaggaattctaccggttgaaccacattcaccaaacatatgatttcgtgaagaaaatgagagaggagtacagaaagctcaatcgagttgaaatgagcatatgggaatgctgtgaactcctcaatgaagttgtggacgacagtgatcccgatttggacgaaccccaaattgagcatctcggaaaagtgttgctgcttccgagctttggaggccttcctcaatgggctgttgttggagacacacatccagttgggtgcccctttgatggctccattgtccaccacaagtacttcaaggacaacccggactacaacaatgcgaagtacaacagcagtaagtatggtatttacgcacatgggattggcctggagaatgtgttgatgtcttggggtcatgacgactacatgtacttggtggccaaggaaaatggcacaactttgcctcaggccggattgttcattatccggtatcactccttttatcctttgcacaaatgcggggtgtataagcacctcatgaacaaggaggatgaagataacttgaagtggcttaaaatcttcaacaagtatgatctctacagcaagagcaaagttcgacttgatgttgagaaagtcaagccatattacttgtcccttattgagaagtacttcccagcaaagctgaaatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

300

Amino Acids

34.87

Weight (kDa)

5.51

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	486
AciI	CCGC	1 cut(s)	729
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	3 cut(s)	33, 184, 648
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	5 cut(s)	302, 521, 557, 641, 878
AfiI	CCNNNNNNNGG	3 cut(s)	437, 497, 680
AflIII	ACRYGT	1 cut(s)	636
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	5 cut(s)	253, 323, 526, 775, 793
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	4 cut(s)	137, 310, 435, 892
AluI	AGCT	4 cut(s)	137, 310, 435, 892
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	6 cut(s)	33, 184, 442, 595, 648, 678
ApeKI	GCWGC	1 cut(s)	424
ApoI	RAATTY	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	878
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	46
AxyI	CCTNAGG	2 cut(s)	24, 675
BaeGI	GKGCMC	1 cut(s)	491
BalI	TGGCCA	3 cut(s)	35, 186, 650
BanI	GGYRCC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	3 cut(s)	71, 110, 491
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	808
BisI	GCNGC	1 cut(s)	425
BlsI	GCNGC	1 cut(s)	426
BmcAI	AGTACT	2 cut(s)	521, 878
Bme1390I	CCNGG	2 cut(s)	536, 599
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	488, 502
BmrFI	CCNGG	2 cut(s)	536, 599
BmsI	GCATC	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	620
Bpu14I	TTCGAA	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	2 cut(s)	246, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	3 cut(s)	437, 497, 680
Bse118I	RCCGGY	2 cut(s)	107, 246
Bse1I	ACTGG	2 cut(s)	60, 479
Bse21I	CCTNAGG	2 cut(s)	24, 675
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	3 cut(s)	82, 475, 766
BseLI	CCNNNNNNNGG	3 cut(s)	437, 497, 680
BseMII	CTCAG	2 cut(s)	15, 689
BseNI	ACTGG	2 cut(s)	60, 479
BseRI	GAGGAG	2 cut(s)	311, 341
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	411
BseYI	CCCAGC	1 cut(s)	883
BshFI	GGCC	6 cut(s)	35, 186, 444, 597, 650, 680
BshNI	GGYRCC	1 cut(s)	486
BshTI	ACCGGT	1 cut(s)	246
BsiSI	CCGG	5 cut(s)	108, 247, 536, 681, 697
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	3 cut(s)	437, 497, 680
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	847
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	6 cut(s)	35, 186, 444, 597, 650, 680
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	376, 802
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	6 cut(s)	35, 186, 444, 597, 650, 680
BspCNI	CTCAG	2 cut(s)	16, 688
BspHI	TCATGA	2 cut(s)	625, 747
BspLI	GGNNCC	2 cut(s)	488, 502
BspPI	GGATC	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	486
BsrFI	RCCGGY	2 cut(s)	107, 246
BsrI	ACTGG	2 cut(s)	60, 479
BssAI	RCCGGY	2 cut(s)	107, 246
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	2 cut(s)	376, 802
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	374
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	24, 675
BstF5I	GGATG	3 cut(s)	82, 475, 766
BstKTI	GATC	2 cut(s)	379, 805
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	2 cut(s)	376, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	640
BstSCI	CCNGG	2 cut(s)	534, 597
BstSFI	CTRYAG	1 cut(s)	808
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	67
Bsu36I	CCTNAGG	2 cut(s)	24, 675
BsuRI	GGCC	6 cut(s)	35, 186, 444, 597, 650, 680
BtsCI	GGATG	3 cut(s)	82, 475, 766
BtsIMutI	CAGTG	2 cut(s)	67, 379
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	2 cut(s)	625, 747
Cfr10I	RCCGGY	2 cut(s)	107, 246
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	5 cut(s)	301, 520, 556, 640, 877
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	4 cut(s)	587, 626, 637, 748
CviQI	GTAC	5 cut(s)	301, 520, 556, 640, 877
DdeI	CTNAG	2 cut(s)	24, 675
DpnI	GATC	2 cut(s)	378, 804
DpnII	GATC	2 cut(s)	376, 802
EaeI	YGGCCR	3 cut(s)	33, 184, 648
Eco130I	CCWWGG	1 cut(s)	651
Eco147I	AGGCCT	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	46
Eco81I	CCTNAGG	2 cut(s)	24, 675
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	4 cut(s)	590, 629, 640, 751
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FaqI	GGGAC	1 cut(s)	847
FatI	CATG	4 cut(s)	586, 625, 636, 747
FauI	CCCGC	1 cut(s)	722
FauNDI	CATATG	2 cut(s)	271, 332
Fnu4HI	GCNGC	1 cut(s)	425
FokI	GGATG	3 cut(s)	89, 462, 773
Fsp4HI	GCNGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	425
GsaI	CCCAGC	1 cut(s)	887
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	6 cut(s)	35, 186, 444, 597, 650, 680
HapII	CCGG	5 cut(s)	108, 247, 536, 681, 697
Hin1II	CATG	4 cut(s)	590, 629, 640, 751
HindIII	AAGCTT	1 cut(s)	135
HpaII	CCGG	5 cut(s)	108, 247, 536, 681, 697
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	347, 367, 511
Hpy188I	TCNGA	2 cut(s)	413, 432
Hpy188III	TCNNGA	4 cut(s)	280, 380, 626, 748
Hpy8I	GTNNAC	3 cut(s)	347, 367, 511
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	179, 209, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	2 cut(s)	24, 675
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	590, 629, 640, 751
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	376, 802
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	1 cut(s)	415
MaeII	ACGT	1 cut(s)	102
MalI	GATC	2 cut(s)	378, 804
MboI	GATC	2 cut(s)	376, 802
MboII	GAAGA	3 cut(s)	295, 776, 781
MhlI	GDGCHC	1 cut(s)	491
MlsI	TGGCCA	3 cut(s)	35, 186, 650
MluCI	AATT	2 cut(s)	239, 399
MluNI	TGGCCA	3 cut(s)	35, 186, 650
MmeI	TCCRAC	2 cut(s)	54, 445
Mox20I	TGGCCA	3 cut(s)	35, 186, 650
Mph1103I	ATGCAT	1 cut(s)	181
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	878
MscI	TGGCCA	3 cut(s)	35, 186, 650
MseI	TTAA	1 cut(s)	783
Msp20I	TGGCCA	3 cut(s)	35, 186, 650
MspI	CCGG	5 cut(s)	108, 247, 536, 681, 697
MspR9I	CCNGG	2 cut(s)	536, 599
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	441
NaeI	GCCGGC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	536
NdeI	CATATG	2 cut(s)	271, 332
NdeII	GATC	2 cut(s)	376, 802
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	4 cut(s)	590, 629, 640, 751
NlaIV	GGNNCC	2 cut(s)	488, 502
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	640
NspV	TTCGAA	1 cut(s)	95
PagI	TCATGA	2 cut(s)	625, 747
PceI	AGGCCT	1 cut(s)	444
PciI	ACATGT	1 cut(s)	636
PctI	GAATGC	1 cut(s)	344
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	878
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	426
PscI	ACATGT	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	597
PspFI	CCCAGC	1 cut(s)	883
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	488, 502
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	5 cut(s)	302, 521, 557, 641, 878
RsaNI	GTAC	5 cut(s)	301, 520, 556, 640, 877
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	1 cut(s)	425
Sau3AI	GATC	2 cut(s)	376, 802
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	2 cut(s)	521, 878
ScrFI	CCNGG	2 cut(s)	536, 599
SduI	GDGCHC	1 cut(s)	491
SetI	ASST	9 cut(s)	30, 86, 105, 139, 232, 312, 437, 747, 894
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	808
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	2 cut(s)	239, 399
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	534, 597
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	95, 146, 316, 826
TasI	AATT	2 cut(s)	239, 399
TatI	WGTACW	5 cut(s)	300, 519, 555, 639, 876
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	2 cut(s)	67, 379
TseI	GCWGC	1 cut(s)	424
TspDTI	ATGAA	6 cut(s)	69, 148, 372, 679, 764, 777
TspRI	CASTG	2 cut(s)	67, 379
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	640
XmnI	GAANNNNTTC	1 cut(s)	878
ZrmI	AGTACT	2 cut(s)	521, 878
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.