Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

19167016 .. 19240104

Gene Structure 73089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG223000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTGCAAAAGTCATTCAGGGATTATAATGCAGAAAGTGAGAGGCAGAAAGGTGTGGAGGAATTTTATCGTTTGAACCACATTAATCAAACGTATGATTTTGTAAAAAGGACGAGAGAGGAGTACAAAAAATTGGATAGAGTGGAAACGAGCATATGGGAATGTTGTGAGCTCCTGAATGAGGTTGTGGATGAGAGTGACCCGGATTTGGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGGCAATTAGAAAAGACTATCCGAATGAAGATTGGCTGCACCTTACCGCTCTCATTCATGATCTCGGGAAAGTGCTTTTTCTTCCTAAGTTTGGAGGACTTCCTCAATGGGCTGTTGTTGAAGACACACATCCTCTTGGGTGCGCTTTTGATGAATCCATCGTTCACCACAAGTACTTCAAGGACAATCCGGATTCCAAAAATCCTGCGTACAACACCAAGAATGGAATTTACAAAGAAGGATGTGGACTAGAAAATGTGATGATCTCATGGGGTCATGATGACTACATGTACATGGTTGCCAAGGAAAATGGGACAACTTTGCCGGAGGCTGGATTGTTTGTTATCCGGTATCACTCATTTTATCCTCTGCACAAGGCAGGGGCATATACACACCTAATGAACAAGGAAGACAAAGAGAATATGAAGTGGCTTCATATTTTTAACAAATATGACCTCTATAGCAAGAGCAAAGTTCAAGTTGATGTCGACAAGGTCAAGCCTTACTATTTATCCCTTATTAACAAGTACTTCCCAGCGAAGCTAAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

266

Amino Acids

31.44

Weight (kDa)

5.85

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	17 - 266	2.8e-123	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	735
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	1 cut(s)	294
AcsI	RAATTY	3 cut(s)	62, 222, 474
AfaI	GTAC	5 cut(s)	125, 422, 458, 539, 776
AfiI	CCNNNNNNNGG	4 cut(s)	181, 208, 338, 578
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	4 cut(s)	76, 368, 427, 725
AluBI	AGCT	3 cut(s)	172, 245, 790
AluI	AGCT	3 cut(s)	172, 245, 790
Alw21I	GWGCWC	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	311
Aor13HI	TCCGGA	1 cut(s)	436
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	3 cut(s)	62, 222, 474
AseI	ATTAAT	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	375, 663
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	706
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
BmcAI	AGTACT	2 cut(s)	422, 776
Bme1390I	CCNGG	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	203
BpiI	GAAGAC	2 cut(s)	375, 663
Bpu10I	CCTNAGC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	549
BsaWI	WCCGGW	2 cut(s)	436, 594
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 208, 338, 578
BseAI	TCCGGA	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	4 cut(s)	196, 217, 376, 494
BseLI	CCNNNNNNNGG	4 cut(s)	181, 208, 338, 578
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	270
BseYI	CCCAGC	1 cut(s)	781
BsgI	GTGCAG	2 cut(s)	269, 602
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	4 cut(s)	203, 437, 572, 595
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	4 cut(s)	181, 208, 338, 578
BsmFI	GGGAC	1 cut(s)	574
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp13I	TCCGGA	1 cut(s)	436
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	307, 510
BspACI	CCGC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	238
BspEI	TCCGGA	1 cut(s)	436
BspHI	TCATGA	2 cut(s)	304, 523
BsrBI	CCGCTC	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	2 cut(s)	307, 510
BssT1I	CCWWGG	1 cut(s)	549
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstAUI	TGTACA	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	246, 333
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	4 cut(s)	196, 217, 376, 494
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	2 cut(s)	310, 513
BstMBI	GATC	2 cut(s)	307, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	706
BstV1I	GCAGC	1 cut(s)	270
BstV2I	GAAGAC	2 cut(s)	375, 663
BtsCI	GGATG	4 cut(s)	196, 217, 376, 494
CciI	TCATGA	2 cut(s)	304, 523
CfoI	GCGC	1 cut(s)	392
Csp6I	GTAC	5 cut(s)	124, 421, 457, 538, 775
CviAII	CATG	5 cut(s)	305, 516, 524, 535, 541
CviJI	RGCY	8 cut(s)	172, 245, 283, 359, 578, 679, 748, 790
CviKI_1	RGCY	8 cut(s)	172, 245, 283, 359, 578, 679, 748, 790
CviQI	GTAC	5 cut(s)	124, 421, 457, 538, 775
DdeI	CTNAG	2 cut(s)	246, 333
DpnI	GATC	2 cut(s)	309, 512
DpnII	GATC	2 cut(s)	307, 510
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	5 cut(s)	308, 519, 527, 538, 544
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	5 cut(s)	304, 515, 523, 534, 540
FauNDI	CATATG	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	4 cut(s)	203, 224, 363, 501
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	1 cut(s)	284
GsaI	CCCAGC	1 cut(s)	785
HapII	CCGG	4 cut(s)	203, 437, 572, 595
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	5 cut(s)	308, 519, 527, 538, 544
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HinfI	GANTC	2 cut(s)	401, 440
HpaII	CCGG	4 cut(s)	203, 437, 572, 595
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	3 cut(s)	412, 494, 736
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	5 cut(s)	175, 305, 313, 437, 524
Hpy8I	GTNNAC	3 cut(s)	412, 494, 736
HpyAV	CCTTC	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	7, 32, 238, 286, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	2 cut(s)	246, 333
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	5 cut(s)	308, 519, 527, 538, 544
HspAI	GCGC	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	307, 510
LmnI	GCTCC	1 cut(s)	177
Lsp1109I	GCAGC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	309, 512
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	2 cut(s)	307, 510
MboII	GAAGA	4 cut(s)	287, 320, 380, 668
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	5 cut(s)	62, 131, 222, 252, 474
MroI	TCCGGA	1 cut(s)	436
MseI	TTAA	3 cut(s)	84, 690, 768
MslI	CAYNNNNRTG	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	4 cut(s)	203, 437, 572, 595
MspR9I	CCNGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	155
NdeII	GATC	2 cut(s)	307, 510
NlaIII	CATG	5 cut(s)	308, 519, 527, 538, 544
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	538
PagI	TCATGA	2 cut(s)	304, 523
PciI	ACATGT	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	401, 440
PflFI	GACNNNGTC	1 cut(s)	740
PkrI	GCNGC	1 cut(s)	285
PscI	ACATGT	1 cut(s)	534
PshBI	ATTAAT	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	781
PsyI	GACNNNGTC	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	5 cut(s)	125, 422, 458, 539, 776
RsaNI	GTAC	5 cut(s)	124, 421, 457, 538, 775
RseI	CAYNNNNRTG	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	174
SalI	GTCGAC	1 cut(s)	734
SaqAI	TTAA	3 cut(s)	84, 690, 768
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	307, 510
ScaI	AGTACT	2 cut(s)	422, 776
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	706
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	5 cut(s)	62, 131, 222, 252, 474
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	1 cut(s)	497
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	549
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	735
TasI	AATT	5 cut(s)	62, 131, 222, 252, 474
TatI	WGTACW	4 cut(s)	123, 420, 537, 774
TfiI	GAWTC	2 cut(s)	401, 440
Tru1I	TTAA	3 cut(s)	84, 690, 768
Tru9I	TTAA	3 cut(s)	84, 690, 768
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	7 cut(s)	228, 288, 293, 414, 662, 671, 686
Tth111I	GACNNNGTC	1 cut(s)	740
VspI	ATTAAT	1 cut(s)	84
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	3 cut(s)	62, 222, 474
XceI	RCATGY	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	1 cut(s)	497
ZrmI	AGTACT	2 cut(s)	422, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.