Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

53135600 .. 53136700

Gene Structure 1101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACGATCATCCTTGAGAAGTCTGAGGCTGTGTCAATAGGGGAGGACCAGAATGGAACCAGTGATTTAGTGTTGGATGGTGGATTTGTGGTTCCGAAAGACGTAAATGGCAACTATGGATGTGTGAAGCCAGAAAAGCTAGTGTCGAACGATGAGTTCATTGCCCCTGAAATCAATGCATTTGCCCAGACATTCAGGGATTACAATGCAGAGAGTGAGAGGCAGAAAGGTGTGGAGGAATTCTACCGGTTGAACCACATTCACCAAGCAAATGATTTCGTGAAGAAAATGAGAGAGGAGTACAGAAAGCTCAATCGAGTTGAAATGATTGTGGACGACAGTGATCCCGATTTGGACGAACCCCAAATTGAGCACTTTTACCCTGATGAAGACTGGCTTCACTTGACTGCTCTTATTCATGATCTTGGAAAAGTGCTGCTGCTTCCGAGCTTTGGAGGCCTTCCTCAATGGGCTGTTGTTGGAGACACACATCCAGTTGGGTGCCCCTTTGATGGCTCCATTGTCCAGTACAAATACTTCAAGGACAACCCGGACTACAACAATCCGAAGTACAGCAGCAGCATGGGATTTACGCACAAGGGATTGGCCTGGAGAATGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

208

Amino Acids

23.61

Weight (kDa)

4.76

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	76 - 200	1e-37	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	501
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	3 cut(s)	302, 530, 572
AfiI	CCNNNNNNNGG	2 cut(s)	452, 512
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	253, 323, 541
AjnI	CCWGG	1 cut(s)	608
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	3 cut(s)	139, 310, 450
AluI	AGCT	3 cut(s)	139, 310, 450
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	477
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	457, 606
ApeKI	GCWGC	4 cut(s)	436, 439, 576, 579
ApoI	RAATTY	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	501
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	423, 426, 588, 591
BccI	CCATC	2 cut(s)	71, 506
BciT130I	CCWGG	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	477
BfaI	CTAG	1 cut(s)	140
BisI	GCNGC	4 cut(s)	437, 440, 577, 580
BlsI	GCNGC	4 cut(s)	438, 441, 578, 581
Bme1390I	CCNGG	2 cut(s)	551, 610
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	4 cut(s)	58, 93, 503, 517
BmrFI	CCNGG	2 cut(s)	551, 610
BpiI	GAAGAC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	551
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 512
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	4 cut(s)	60, 398, 494, 526
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	610
BseGI	GGATG	4 cut(s)	9, 82, 125, 490
BseLI	CCNNNNNNNGG	2 cut(s)	452, 512
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	4 cut(s)	60, 398, 494, 526
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	4 cut(s)	423, 426, 588, 591
BshFI	GGCC	2 cut(s)	459, 608
BshNI	GGYRCC	1 cut(s)	501
BshTI	ACCGGT	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	247, 551
BslI	CCNNNNNNNGG	2 cut(s)	452, 512
BsmAI	GTCTC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	459, 608
Bsp1286I	GDGCHC	2 cut(s)	375, 506
Bsp143I	GATC	3 cut(s)	6, 343, 421
BspANI	GGCC	2 cut(s)	459, 608
BspCNI	CTCAG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	4 cut(s)	58, 93, 503, 517
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	4 cut(s)	60, 398, 494, 526
BssAI	RCCGGY	1 cut(s)	246
BssMI	GATC	3 cut(s)	6, 343, 421
Bst2UI	CCWGG	1 cut(s)	610
Bst4CI	ACNGT	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	9, 82, 125, 490
BstKTI	GATC	3 cut(s)	9, 346, 424
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	3 cut(s)	6, 343, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 456
BstNI	CCWGG	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	549, 608
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	4 cut(s)	423, 426, 588, 591
BstV2I	GAAGAC	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	459, 608
BtsCI	GGATG	4 cut(s)	9, 82, 125, 490
BtsIMutI	CAGTG	2 cut(s)	67, 346
CciI	TCATGA	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	301, 529, 571
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	2 cut(s)	419, 583
CviQI	GTAC	3 cut(s)	301, 529, 571
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	3 cut(s)	8, 345, 423
DpnII	GATC	3 cut(s)	6, 343, 421
Eco147I	AGGCCT	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	608
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	2 cut(s)	422, 586
FaiI	YATR	3 cut(s)	117, 420, 584
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	2 cut(s)	418, 582
Fnu4HI	GCNGC	4 cut(s)	437, 440, 577, 580
FokI	GGATG	3 cut(s)	89, 132, 477
Fsp4HI	GCNGC	4 cut(s)	437, 440, 577, 580
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	4 cut(s)	437, 440, 577, 580
HaeIII	GGCC	2 cut(s)	459, 608
HapII	CCGG	2 cut(s)	247, 551
Hin1II	CATG	2 cut(s)	422, 586
HpaII	CCGG	2 cut(s)	247, 551
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	25, 96, 447, 567
Hpy188III	TCNNGA	4 cut(s)	280, 347, 419, 621
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	179, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 456
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	422, 586
Kzo9I	GATC	3 cut(s)	6, 343, 421
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	4 cut(s)	423, 426, 588, 591
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	102
MalI	GATC	3 cut(s)	8, 345, 423
MboI	GATC	3 cut(s)	6, 343, 421
MboII	GAAGA	2 cut(s)	295, 401
MhlI	GDGCHC	2 cut(s)	375, 506
MluCI	AATT	2 cut(s)	239, 366
MmeI	TCCRAC	2 cut(s)	54, 460
MnlI	CCTC	7 cut(s)	19, 37, 213, 229, 289, 449, 474
Mph1103I	ATGCAT	1 cut(s)	181
MspI	CCGG	2 cut(s)	247, 551
MspR9I	CCNGG	2 cut(s)	551, 610
MvaI	CCWGG	1 cut(s)	610
MwoI	GCNNNNNNNGC	2 cut(s)	136, 456
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	3 cut(s)	6, 343, 421
NlaIII	CATG	2 cut(s)	422, 586
NlaIV	GGNNCC	4 cut(s)	58, 93, 503, 517
NsiI	ATGCAT	1 cut(s)	181
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	459
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	4 cut(s)	438, 441, 578, 581
Psp6I	CCWGG	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	608
PspN4I	GGNNCC	4 cut(s)	58, 93, 503, 517
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	3 cut(s)	302, 530, 572
RsaNI	GTAC	3 cut(s)	301, 529, 571
SatI	GCNGC	4 cut(s)	437, 440, 577, 580
Sau3AI	GATC	3 cut(s)	6, 343, 421
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	551, 610
SduI	GDGCHC	2 cut(s)	375, 506
SetI	ASST	5 cut(s)	105, 141, 232, 312, 452
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	239, 366
SseBI	AGGCCT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	2 cut(s)	549, 608
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	146, 316
TasI	AATT	2 cut(s)	239, 366
TatI	WGTACW	3 cut(s)	300, 528, 570
TscAI	CASTG	2 cut(s)	67, 346
TseI	GCWGC	4 cut(s)	436, 439, 576, 579
TspDTI	ATGAA	3 cut(s)	148, 402, 407
TspRI	CASTG	2 cut(s)	67, 346
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	239
XspI	CTAG	1 cut(s)	140
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.