Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

5784353 .. 5785448

Gene Structure 1096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTGTGGCACCAGCAAGCGACGCGTTCATTTCCCCCGAAATTAATTCATTTGGGCAGTCATTCAGGGACTATAATGCAGAAAGTGAGAGGCAGAAAGGCGTGGAGGAATTCTACCGGCTGAACCACATTAACCAAACGTACGATTTCGTGAAGAAGATGAGAGAGGAGTATAGCAAGTTGAATAGAGTGGAAATGAGCATATGGGAATGTTGTGAGCTCCTGAATGAGGTTGTGGATGACAGTGACCCTGATTTGGATGAACCACAGATTGAGCACTTGTTGCAAACAGCAGAAGCAGTTAGAAAAGACTATCCCAATGAAGATTGGCTGCACTTGACTGCTCTTATTCATGACCTTGGAAAAGTGCTTCTGCTTCCTAAGTTTGGAGGGCTTCCTCAATGGGCTGTGGTCGGAGACACGCATCCTCTTGGGTGTGCTTTTGATGAGGCCATTGTTCACCACAAGTACTTCAAGGAAAATCCAGACCACAACAACCCTTCATATAATTCTAAGTACGGAATTTACTCCCATGGATGTGGACTTGAAAATGTGATGATGTCATGGGGTCATGATGACTACATGTACTTGGTGGCCAAGGAAAATGGAAGCACTTTGCCTCAGGCTGGATTGTTCATCATTAGGTATCACTCTTTTTATCCTCTGCACAAATCTGGGGCATATGAACACCTAATGAACAAGGAGGATGAAGAGAATTTGAAGTGGCTTCAAATATTCAACAAATATGACCTCTATAGCAAGAGCAAAGTTCGAATTGATGTTGAGAAAGTAAAGCCTTACTATTTATCTCTTATTGACAAGTACTTCCCAGAAAAGCTCAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

283

Amino Acids

33.04

Weight (kDa)

5.29

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccII	CGCG	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	3 cut(s)	110, 522, 715
AfaI	GTAC	5 cut(s)	143, 470, 518, 587, 824
AfiI	CCNNNNNNNGG	4 cut(s)	229, 256, 386, 626
AflIII	ACRYGT	2 cut(s)	24, 582
AgsI	TTSAA	6 cut(s)	184, 475, 548, 721, 731, 739
AluBI	AGCT	2 cut(s)	220, 838
AluI	AGCT	2 cut(s)	220, 838
Alw21I	GWGCWC	2 cut(s)	222, 279
Alw26I	GTCTC	1 cut(s)	411
AoxI	GGCC	2 cut(s)	450, 594
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	3 cut(s)	110, 522, 715
AseI	ATTAAT	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	772
AxyI	CCTNAGG	1 cut(s)	621
BalI	TGGCCA	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	222, 279
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	837
BcoDI	GTCTC	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	754
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
BmcAI	AGTACT	2 cut(s)	470, 824
BmiI	GGNNCC	1 cut(s)	12
BmsI	GCATC	1 cut(s)	433
Bpu14I	TTCGAA	1 cut(s)	772
BsaJI	CCNNGG	3 cut(s)	358, 532, 597
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 256, 386, 626
Bse118I	RCCGGY	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	621
BseDI	CCNNGG	3 cut(s)	358, 532, 597
BseGI	GGATG	5 cut(s)	244, 265, 424, 542, 712
BseLI	CCNNNNNNNGG	4 cut(s)	229, 256, 386, 626
BseMII	CTCAG	1 cut(s)	635
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	318
BsgI	GTGCAG	2 cut(s)	317, 650
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	452, 596
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	222, 279
BsiSI	CCGG	1 cut(s)	118
BsiWI	CGTACG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	4 cut(s)	229, 256, 386, 626
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	452, 596
Bsp119I	TTCGAA	1 cut(s)	772
Bsp1286I	GDGCHC	2 cut(s)	222, 279
Bsp19I	CCATGG	1 cut(s)	532
BspANI	GGCC	2 cut(s)	452, 596
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	2 cut(s)	352, 571
BspLI	GGNNCC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	772
BspT107I	GGYRCC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	358, 532, 597
BssT1I	CCWWGG	3 cut(s)	358, 532, 597
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	705
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstBI	TTCGAA	1 cut(s)	772
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	4 cut(s)	381, 513, 621, 839
BstDSI	CCRYGG	1 cut(s)	532
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	5 cut(s)	244, 265, 424, 542, 712
BstFNI	CGCG	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 283
BstNSI	RCATGY	1 cut(s)	586
BstSFI	CTRYAG	1 cut(s)	754
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	539
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	452, 596
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	5 cut(s)	244, 265, 424, 542, 712
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	19
CciI	TCATGA	2 cut(s)	352, 571
Cfr10I	RCCGGY	1 cut(s)	117
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	5 cut(s)	142, 469, 517, 586, 823
CviAII	CATG	5 cut(s)	353, 533, 564, 572, 583
CviQI	GTAC	5 cut(s)	142, 469, 517, 586, 823
DdeI	CTNAG	4 cut(s)	381, 513, 621, 839
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	3 cut(s)	358, 532, 597
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	110
EcoT14I	CCWWGG	3 cut(s)	358, 532, 597
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	3 cut(s)	358, 532, 597
FaeI	CATG	5 cut(s)	356, 536, 567, 575, 586
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	5 cut(s)	352, 532, 563, 571, 582
FauNDI	CATATG	2 cut(s)	203, 682
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	5 cut(s)	251, 272, 411, 549, 719
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	332
GluI	GCNGC	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	452, 596
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	5 cut(s)	356, 536, 567, 575, 586
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	460, 542
Hpy188I	TCNGA	2 cut(s)	416, 842
Hpy188III	TCNNGA	5 cut(s)	151, 223, 353, 485, 572
Hpy8I	GTNNAC	2 cut(s)	460, 542
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	510
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	4 cut(s)	80, 286, 334, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 283
HpyF3I	CTNAG	4 cut(s)	381, 513, 621, 839
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	5 cut(s)	356, 536, 567, 575, 586
LmnI	GCTCC	1 cut(s)	225
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	1 cut(s)	433
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	245
MboII	GAAGA	4 cut(s)	166, 169, 335, 722
MhlI	GDGCHC	2 cut(s)	222, 279
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	7 cut(s)	42, 46, 110, 508, 522, 715, 774
MluI	ACGCGT	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	596
MmeI	TCCRAC	1 cut(s)	394
Mox20I	TGGCCA	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	2 cut(s)	45, 132
MslI	CAYNNNNRTG	1 cut(s)	537
Msp20I	TGGCCA	1 cut(s)	596
MspI	CCGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	23, 283
NcoI	CCATGG	1 cut(s)	532
NdeI	CATATG	2 cut(s)	203, 682
NlaIII	CATG	5 cut(s)	356, 536, 567, 575, 586
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	586
NspV	TTCGAA	1 cut(s)	772
PagI	TCATGA	2 cut(s)	352, 571
PciI	ACATGT	1 cut(s)	582
Pfl23II	CGTACG	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	333
PscI	ACATGT	1 cut(s)	582
PshBI	ATTAAT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	222
PspLI	CGTACG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	12
RsaI	GTAC	5 cut(s)	143, 470, 518, 587, 824
RsaNI	GTAC	5 cut(s)	142, 469, 517, 586, 823
RseI	CAYNNNNRTG	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	45, 132
SatI	GCNGC	1 cut(s)	332
ScaI	AGTACT	2 cut(s)	470, 824
SduI	GDGCHC	2 cut(s)	222, 279
SetI	ASST	8 cut(s)	143, 222, 234, 360, 647, 693, 753, 840
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	754
SfuI	TTCGAA	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	7 cut(s)	42, 46, 110, 508, 522, 715, 774
SspI	AATATT	1 cut(s)	735
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	3 cut(s)	358, 532, 597
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	772
TasI	AATT	7 cut(s)	42, 46, 110, 508, 522, 715, 774
TatI	WGTACW	3 cut(s)	468, 585, 822
Tru1I	TTAA	2 cut(s)	45, 132
Tru9I	TTAA	2 cut(s)	45, 132
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	1 cut(s)	250
VspI	ATTAAT	1 cut(s)	45
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	3 cut(s)	110, 522, 715
XceI	RCATGY	1 cut(s)	586
ZrmI	AGTACT	2 cut(s)	470, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.