Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

53176010 .. 53177402

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003822

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGACTATCCTCGTTGAGATGCCTGAGGTAGTGGCCAAAGTGGAGGACCAGAATGAAACCAGTGATTTGGTGTTGGATGGTGGGTTTGTGGTTTCGAAAGACGTAGCCGGCAACGATGGGTGTGTGAAGCCAGAAGCTTTAGTGTCGAACGATGAGTTCATTGCCCCTGAAATCAATGCATTTGGCCAGACATTCAGGGATTACAATGCAGAGAGTGAGAGGCAGAAAGGTGTGGAGGAATTCTACCGGTTGAACCACATTCACCAAACATATGATTTCGTGAAGAAAATGAGAGAGGAGTACAGAAAGCTCAATCGAGTTGAAATGAGCATATGGGAATGCTGTGAACTCCTCAATGAAGTTGTGGATGATAGTGATCCGGACCTGGATGAACCCCAAATTGAGCACTTGTTGCAAACAGCTGAAGCAATTCGAAAAGACTACCCCGACGAAGACTGGCTTCACTTGACTGCTGTTATTCATGATCTCGGAAAAGTGCTGCTGCTTCCAAGCTTTGGAGGCCTTCCTCAATGGGCTGTTGTTGGAGACACACATCCAGTTGGGTGCCCCTTTGATGGCTCCATTGTCCACCACAAGTACTTCAAGGACAACCCGGACTACAACAATCCGAAGTACAACAGCAGTAAGTATGGTATTTACGCACAGGGGATTGGCCTGGAGAATGTGTTGATGTCTTGGGGTCATGACGACTACATGTACTTGGTGGCCAAAGAAAATGGCTCAACTTTGCCTCAGACTGGATTGTTCATTATCCGGTATCACTCCTTTTATCCTCTGCACAAATGCGAGGCATATGAGCACCTCATGAACAAGGAGGATGAAGAGAACTTGAAGTGGCTTAAAATCTCCAACAAGTATGATCTCTACAGCAAGAGCAAAGTTAGAATTGATGTCGAAAAAGTCAAGCCATATTACTTGTCTCTTATTGAGAAGTACTTCCCAGCAAAGCTGAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

327

Amino Acids

37.8

Weight (kDa)

4.96

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	76 - 326	1.8e-121	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	564
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccIII	TCCGGA	1 cut(s)	379
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	3 cut(s)	33, 184, 726
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	5 cut(s)	302, 599, 635, 719, 956
AfiI	CCNNNNNNNGG	3 cut(s)	515, 575, 758
AflIII	ACRYGT	1 cut(s)	714
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	4 cut(s)	253, 323, 604, 853
AjnI	CCWGG	2 cut(s)	384, 675
AluBI	AGCT	5 cut(s)	137, 310, 422, 513, 970
AluI	AGCT	5 cut(s)	137, 310, 422, 513, 970
Alw21I	GWGCWC	2 cut(s)	408, 822
Alw26I	GTCTC	2 cut(s)	540, 945
AlwI	GGATC	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	5 cut(s)	33, 184, 520, 673, 726
ApeKI	GCWGC	2 cut(s)	499, 502
ApoI	RAATTY	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	2 cut(s)	429, 956
AspS9I	GGNCC	2 cut(s)	46, 382
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	2 cut(s)	95, 433
AvaII	GGWCC	2 cut(s)	46, 382
AxyI	CCTNAGG	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	569
BalI	TGGCCA	3 cut(s)	35, 186, 728
BanI	GGYRCC	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	2 cut(s)	408, 822
BbvI	GCAGC	2 cut(s)	486, 489
BccI	CCATC	3 cut(s)	71, 110, 569
BciT130I	CCWGG	2 cut(s)	386, 677
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	2 cut(s)	540, 945
BfmI	CTRYAG	1 cut(s)	886
BisI	GCNGC	2 cut(s)	500, 503
BlsI	GCNGC	2 cut(s)	501, 504
BmcAI	AGTACT	2 cut(s)	599, 956
Bme1390I	CCNGG	3 cut(s)	386, 614, 677
Bme18I	GGWCC	2 cut(s)	46, 382
BmgT120I	GGNCC	2 cut(s)	46, 382
BmiI	GGNNCC	2 cut(s)	566, 580
BmrFI	CCNGG	3 cut(s)	386, 614, 677
BmsI	GCATC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	698
Bpu14I	TTCGAA	2 cut(s)	95, 433
BpuMI	CCSGG	1 cut(s)	614
BsaBI	GATNNNNATC	1 cut(s)	375
BsaWI	WCCGGW	3 cut(s)	246, 379, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	3 cut(s)	515, 575, 758
Bse118I	RCCGGY	2 cut(s)	107, 246
Bse1I	ACTGG	4 cut(s)	60, 461, 557, 763
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	2 cut(s)	386, 677
BseGI	GGATG	5 cut(s)	82, 373, 394, 553, 844
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	515, 575, 758
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	15, 767
BseNI	ACTGG	4 cut(s)	60, 461, 557, 763
BseRI	GAGGAG	2 cut(s)	311, 341
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	486, 489
BseYI	CCCAGC	1 cut(s)	961
BsgI	GTGCAG	1 cut(s)	782
BshFI	GGCC	5 cut(s)	35, 186, 522, 675, 728
BshNI	GGYRCC	1 cut(s)	564
BshTI	ACCGGT	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	408, 822
BsiSI	CCGG	5 cut(s)	108, 247, 380, 614, 775
BslI	CCNNNNNNNGG	3 cut(s)	515, 575, 758
BsmAI	GTCTC	2 cut(s)	540, 945
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	5 cut(s)	35, 186, 522, 675, 728
Bsp119I	TTCGAA	2 cut(s)	95, 433
Bsp1286I	GDGCHC	3 cut(s)	408, 569, 822
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	376, 484, 880
BspANI	GGCC	5 cut(s)	35, 186, 522, 675, 728
BspCNI	CTCAG	2 cut(s)	16, 766
BspEI	TCCGGA	1 cut(s)	379
BspHI	TCATGA	3 cut(s)	481, 703, 825
BspLI	GGNNCC	2 cut(s)	566, 580
BspPI	GGATC	1 cut(s)	371
BspT104I	TTCGAA	2 cut(s)	95, 433
BspT107I	GGYRCC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	2 cut(s)	107, 246
BsrI	ACTGG	4 cut(s)	60, 461, 557, 763
BssAI	RCCGGY	2 cut(s)	107, 246
BssMI	GATC	3 cut(s)	376, 484, 880
Bst2UI	CCWGG	2 cut(s)	386, 677
Bst6I	CTCTTC	1 cut(s)	837
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstBI	TTCGAA	2 cut(s)	95, 433
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	24, 753
BstF5I	GGATG	5 cut(s)	82, 373, 394, 553, 844
BstKTI	GATC	3 cut(s)	379, 487, 883
BstMAI	GTCTC	2 cut(s)	540, 945
BstMBI	GATC	3 cut(s)	376, 484, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 519
BstNI	CCWGG	2 cut(s)	386, 677
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	3 cut(s)	384, 612, 675
BstSFI	CTRYAG	1 cut(s)	886
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	2 cut(s)	486, 489
BstV2I	GAAGAC	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	5 cut(s)	35, 186, 522, 675, 728
BtsCI	GGATG	5 cut(s)	82, 373, 394, 553, 844
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	3 cut(s)	481, 703, 825
Cfr10I	RCCGGY	2 cut(s)	107, 246
Cfr13I	GGNCC	2 cut(s)	46, 382
Csp6I	GTAC	5 cut(s)	301, 598, 634, 718, 955
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	4 cut(s)	482, 704, 715, 826
CviQI	GTAC	5 cut(s)	301, 598, 634, 718, 955
DdeI	CTNAG	2 cut(s)	24, 753
DpnI	GATC	3 cut(s)	378, 486, 882
DpnII	GATC	3 cut(s)	376, 484, 880
EaeI	YGGCCR	3 cut(s)	33, 184, 726
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Eco147I	AGGCCT	1 cut(s)	522
Eco47I	GGWCC	2 cut(s)	46, 382
Eco57I	CTGAAG	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	384, 675
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	4 cut(s)	485, 707, 718, 829
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	4 cut(s)	481, 703, 714, 825
FauNDI	CATATG	3 cut(s)	271, 332, 814
Fnu4HI	GCNGC	2 cut(s)	500, 503
FokI	GGATG	5 cut(s)	89, 380, 401, 540, 851
Fsp4HI	GCNGC	2 cut(s)	500, 503
GluI	GCNGC	2 cut(s)	500, 503
GsaI	CCCAGC	1 cut(s)	965
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	5 cut(s)	35, 186, 522, 675, 728
HapII	CCGG	5 cut(s)	108, 247, 380, 614, 775
Hin1II	CATG	4 cut(s)	485, 707, 718, 829
HindIII	AAGCTT	2 cut(s)	135, 511
HpaII	CCGG	5 cut(s)	108, 247, 380, 614, 775
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	347, 589
Hpy188I	TCNGA	3 cut(s)	491, 630, 756
Hpy188III	TCNNGA	5 cut(s)	280, 380, 482, 704, 826
Hpy8I	GTNNAC	2 cut(s)	347, 589
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	1 cut(s)	533
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	179, 209, 415, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 519
HpyF3I	CTNAG	2 cut(s)	24, 753
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	485, 707, 718, 829
Kpn2I	TCCGGA	1 cut(s)	379
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	376, 484, 880
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	2 cut(s)	486, 489
LweI	GCATC	1 cut(s)	9
MaeII	ACGT	1 cut(s)	102
MalI	GATC	3 cut(s)	378, 486, 882
MboI	GATC	3 cut(s)	376, 484, 880
MboII	GAAGA	3 cut(s)	295, 464, 854
MhlI	GDGCHC	3 cut(s)	408, 569, 822
MlsI	TGGCCA	3 cut(s)	35, 186, 728
MluCI	AATT	4 cut(s)	239, 399, 429, 906
MluNI	TGGCCA	3 cut(s)	35, 186, 728
MmeI	TCCRAC	3 cut(s)	54, 523, 894
Mox20I	TGGCCA	3 cut(s)	35, 186, 728
Mph1103I	ATGCAT	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	379
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	2 cut(s)	429, 956
MscI	TGGCCA	3 cut(s)	35, 186, 728
MseI	TTAA	1 cut(s)	861
Msp20I	TGGCCA	3 cut(s)	35, 186, 728
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	5 cut(s)	108, 247, 380, 614, 775
MspR9I	CCNGG	3 cut(s)	386, 614, 677
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	2 cut(s)	386, 677
MwoI	GCNNNNNNNGC	2 cut(s)	412, 519
NaeI	GCCGGC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	614
NdeI	CATATG	3 cut(s)	271, 332, 814
NdeII	GATC	3 cut(s)	376, 484, 880
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	4 cut(s)	485, 707, 718, 829
NlaIV	GGNNCC	2 cut(s)	566, 580
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	718
NspV	TTCGAA	2 cut(s)	95, 433
PagI	TCATGA	3 cut(s)	481, 703, 825
PceI	AGGCCT	1 cut(s)	522
PciI	ACATGT	1 cut(s)	714
PctI	GAATGC	1 cut(s)	344
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	2 cut(s)	429, 956
PflMI	CCANNNNNTGG	1 cut(s)	515
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	501, 504
PscI	ACATGT	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	384, 675
PspFI	CCCAGC	1 cut(s)	961
PspGI	CCWGG	2 cut(s)	384, 675
PspN4I	GGNNCC	2 cut(s)	566, 580
PspPI	GGNCC	2 cut(s)	46, 382
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	5 cut(s)	302, 599, 635, 719, 956
RsaNI	GTAC	5 cut(s)	301, 598, 634, 718, 955
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	2 cut(s)	500, 503
Sau3AI	GATC	3 cut(s)	376, 484, 880
Sau96I	GGNCC	2 cut(s)	46, 382
ScaI	AGTACT	2 cut(s)	599, 956
ScrFI	CCNGG	3 cut(s)	386, 614, 677
SduI	GDGCHC	3 cut(s)	408, 569, 822
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	886
SfuI	TTCGAA	2 cut(s)	95, 433
SinI	GGWCC	2 cut(s)	46, 382
Sse9I	AATT	4 cut(s)	239, 399, 429, 906
SseBI	AGGCCT	1 cut(s)	522
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	384, 612, 675
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	5 cut(s)	95, 146, 316, 433, 915
TasI	AATT	4 cut(s)	239, 399, 429, 906
TatI	WGTACW	5 cut(s)	300, 597, 633, 717, 954
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	2 cut(s)	499, 502
TspDTI	ATGAA	8 cut(s)	69, 148, 372, 405, 470, 757, 842, 855
TspRI	CASTG	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	2 cut(s)	46, 382
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	718
XmnI	GAANNNNTTC	2 cut(s)	429, 956
ZrmI	AGTACT	2 cut(s)	599, 956
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.