AT2G24205

Egg cell-secreted protein 1.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000547
Physical Location & Seq
Forward (+)
10291348 .. 10291762
415 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24205.1

Sequence Viewer

Length: 345 bp
ATGACGATAAAGAATGTACTTTTTGTTCTAGTAACCATTTGTGTAGCAGTTTCTGTAAATGCTCAACTACAGCAATATCCGATTATTTTCTCAAACCCGCTTCCATTTCTGCGCTCGACTGGTATACTAAACCTACCAGACGTAAAAAAATGTTTCTCGTCCGTGAGGAATGTTCCAGGATGCTTATTAGAGATCTCTCAAGCTTTTGGAGAGAAATTCGGTCACATGATGCCCGCTTGTTGTAAGGCTTTCATGGATAGCATAAAATGCATGCCAAATATTCTATACAGTGTACTTTTCCCTCCTAATTTGAAAGAACAATGTAATCAGGCAGGGATCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

8.75

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 124
AciI CCGC 2 cut(s) 98, 234
AclWI GGATC 2 cut(s) 331, 344
AcsI RAATTY 1 cut(s) 215
AfaI GTAC 2 cut(s) 18, 294
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
AlwI GGATC 2 cut(s) 331, 344
AlwNI CAGNNNCTG 1 cut(s) 53
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 114
BamHI GGATCC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 177
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 68
BglII AGATCT 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 2 cut(s) 170, 219
BpuEI CTTGAG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 124
Bsp143I GATC 2 cut(s) 192, 336
BspACI CCGC 2 cut(s) 98, 234
BspLI GGNNCC 1 cut(s) 338
BspPI GGATC 2 cut(s) 331, 344
BsrI ACTGG 1 cut(s) 124
BssMI GATC 2 cut(s) 192, 336
BssNAI GTATAC 1 cut(s) 125
Bst1107I GTATAC 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 234, 272
BstF5I GGATG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 195, 339
BstMBI GATC 2 cut(s) 192, 336
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 68
BstX2I RGATCY 2 cut(s) 192, 336
BstYI RGATCY 2 cut(s) 192, 336
BstZ17I GTATAC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 234, 272
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 17, 293
CviAII CATG 3 cut(s) 226, 253, 271
CviJI RGCY 2 cut(s) 203, 248
CviKI_1 RGCY 2 cut(s) 203, 248
CviQI GTAC 2 cut(s) 17, 293
DpnI GATC 2 cut(s) 194, 338
DpnII GATC 2 cut(s) 192, 336
EcoRII CCWGG 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 272
FaeI CATG 3 cut(s) 229, 256, 274
FaiI YATR 6 cut(s) 125, 227, 254, 263, 272, 286
FatI CATG 3 cut(s) 225, 252, 270
FauI CCCGC 2 cut(s) 105, 241
FblI GTMKAC 1 cut(s) 124
FokI GGATG 1 cut(s) 192
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 114
Hin1II CATG 3 cut(s) 229, 256, 274
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 201
Hpy166II GTNNAC 2 cut(s) 125, 293
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 125, 293
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 3 cut(s) 229, 256, 274
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 192, 336
LpnPI CCDG 6 cut(s) 105, 150, 162, 189, 314, 318
LweI GCATC 2 cut(s) 170, 219
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 31, 221
MalI GATC 2 cut(s) 194, 338
MboI GATC 2 cut(s) 192, 336
MflI RGATCY 2 cut(s) 192, 336
MluCI AATT 2 cut(s) 215, 307
MnlI CCTC 2 cut(s) 159, 312
Mph1103I ATGCAT 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 2 cut(s) 192, 336
NlaIII CATG 3 cut(s) 229, 256, 274
NlaIV GGNNCC 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 272
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 338
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 2 cut(s) 192, 336
RsaI GTAC 2 cut(s) 18, 294
RsaNI GTAC 2 cut(s) 17, 293
Sau3AI GATC 2 cut(s) 192, 336
ScrFI CCNGG 1 cut(s) 177
SetI ASST 3 cut(s) 135, 144, 205
SfaNI GCATC 2 cut(s) 170, 219
SfcI CTRYAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SphI GCATGC 1 cut(s) 274
Sse9I AATT 2 cut(s) 215, 307
SsiI CCGC 2 cut(s) 98, 234
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 116
TaqII GACCGA 1 cut(s) 209
TasI AATT 2 cut(s) 215, 307
TatI WGTACW 2 cut(s) 16, 292
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 295
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 124
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.