Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Forward (+)

1765298 .. 1765672

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAAATTGTAGCATTGTCTTCCCTGCTGCTAGTGGCATTACTCATCACCACCTTGCTAACCCAACCAGGAATAGCCAATGCGCAGTTGCCACAGACTCCTCCTTCGATTCCAGGCCTGTTTCCACCAGGAACTCCGCAAGATGCACTTAAATGTTGGTCATCTCTAACCGGCATTAGTGGATGTGTTATGGAAATCTTTCAATCTGTTTTCAGCTTGCAATTAGGCACCATTGGTGCCGACTGTTGCAAGGCCTTCCTTTCTATCGAGGAAAGCTGTTTGCCCAAAATGTTTCCTCTCACTCCTTTCTTCCCTCCTTTGCTCAAGAACTTTTGTGCTCTCCAAGGAGGTCCTGCTCCCCTAGCAAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

125

Amino Acids

13.09

Weight (kDa)

7.55

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	51 - 112	3.1e-16	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	227, 236
AciI	CCGC	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	3 cut(s)	67, 112, 127
AluBI	AGCT	2 cut(s)	216, 276
AluI	AGCT	2 cut(s)	216, 276
Alw21I	GWGCWC	1 cut(s)	340
AoxI	GGCC	2 cut(s)	115, 252
ApeKI	GCWGC	1 cut(s)	28
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	350
BanI	GGYRCC	2 cut(s)	227, 236
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	15
BciT130I	CCWGG	3 cut(s)	69, 114, 129
BfaI	CTAG	3 cut(s)	32, 362, 373
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	3 cut(s)	69, 114, 129
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	229, 238
BmrFI	CCNGG	3 cut(s)	69, 114, 129
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	170
BseBI	CCWGG	3 cut(s)	69, 114, 129
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	15
BshFI	GGCC	2 cut(s)	117, 254
BshNI	GGYRCC	2 cut(s)	227, 236
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	171
BsnI	GGCC	2 cut(s)	117, 254
Bsp1286I	GDGCHC	1 cut(s)	340
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	117, 254
BspLI	GGNNCC	2 cut(s)	229, 238
BspT107I	GGYRCC	2 cut(s)	227, 236
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	3 cut(s)	69, 114, 129
Bst4CI	ACNGT	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	3 cut(s)	69, 114, 129
BstSCI	CCNGG	3 cut(s)	67, 112, 127
BstV1I	GCAGC	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	117, 254
BtsCI	GGATG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	350
CviJI	RGCY	5 cut(s)	77, 117, 216, 254, 276
CviKI_1	RGCY	5 cut(s)	77, 117, 216, 254, 276
Eco130I	CCWWGG	1 cut(s)	343
Eco147I	AGGCCT	2 cut(s)	117, 254
Eco47I	GGWCC	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	67, 112, 127
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaiI	YATR	1 cut(s)	191
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	3 cut(s)	32, 362, 373
FspI	TGCGCA	1 cut(s)	84
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	117, 254
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	1 cut(s)	85
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	3 cut(s)	97, 109, 369
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	114, 265
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	146, 220, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HspAI	GCGC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	32, 362, 373
MboII	GAAGA	2 cut(s)	12, 301
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	2 cut(s)	6, 221
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	5 cut(s)	111, 262, 306, 324, 341
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	151
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	3 cut(s)	69, 114, 129
MvaI	CCWGG	3 cut(s)	69, 114, 129
MwoI	GCNNNNNNNGC	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	229, 238
NsbI	TGCGCA	1 cut(s)	84
PceI	AGGCCT	2 cut(s)	117, 254
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	109, 369
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	3 cut(s)	67, 112, 127
PspGI	CCWGG	3 cut(s)	67, 112, 127
PspN4I	GGNNCC	2 cut(s)	229, 238
PspPI	GGNCC	1 cut(s)	350
PspPPI	RGGWCCY	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	29
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	3 cut(s)	69, 114, 129
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	4 cut(s)	56, 218, 278, 352
SfaNI	GCATC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	2 cut(s)	6, 221
SseBI	AGGCCT	2 cut(s)	117, 254
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	3 cut(s)	32, 362, 373
StuI	AGGCCT	2 cut(s)	117, 254
StyD4I	CCNGG	3 cut(s)	67, 112, 127
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	107, 267
TasI	AATT	2 cut(s)	6, 221
TfiI	GAWTC	2 cut(s)	109, 369
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	3 cut(s)	32, 362, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.