Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Reverse (-)

16242221 .. 16242893

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCAATGAAAATGGAAGCATTATCTTCGTTGCTACTTGTGTCATTACTCACTGCTTTGCTAGCCCAGTCTAGGCTAGCCAGTGCGCAGTTGCTGCCGAATCCTCCTTCCATTCCAGGGGGGCTATTTCCACCAGGAACTGCGCCGGATGTACTCAAGTGTTGGTCATCTCTTACTGGCGTCAACGGATGTGTTATGGGAATTTTTCAGTCTGTTTTCAGCTTGCAATTCGGAAAGATTAGTGCCGACTGTTGCAAGGCCTTCGTTGCTGTCGAGGACAGCTGTTTGCCCAAAATGTTTCCTCTCACTCCTTTCTTCCCTCCCATGCTCAAGAACATTTGTGCTCTCCAAGGAAATCCTGCGCCCCCAGAAAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

127

Amino Acids

13.32

Weight (kDa)

8.27

Isoelectric Point (pI)

58.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	53 - 114	4.5e-14	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	72, 117
AjnI	CCWGG	2 cut(s)	115, 133
AluBI	AGCT	2 cut(s)	222, 282
AluI	AGCT	2 cut(s)	222, 282
Alw21I	GWGCWC	1 cut(s)	346
AlwNI	CAGNNNCTG	2 cut(s)	94, 140
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	201
AspLEI	GCGC	3 cut(s)	88, 145, 364
AsuNHI	GCTAGC	2 cut(s)	61, 76
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	4 cut(s)	9, 43, 244, 278
BciT130I	CCWGG	2 cut(s)	117, 135
BfaI	CTAG	4 cut(s)	62, 72, 77, 379
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	117, 135
BmrFI	CCNGG	2 cut(s)	117, 135
BmrI	ACTGGG	1 cut(s)	61
BmtI	GCTAGC	2 cut(s)	65, 80
BmuI	ACTGGG	1 cut(s)	61
BpuEI	CTTGAG	2 cut(s)	140, 314
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	116, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 117
Bse1I	ACTGG	3 cut(s)	67, 81, 181
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	117, 135
BseDI	CCNNGG	2 cut(s)	116, 349
BseGI	GGATG	2 cut(s)	154, 194
BseLI	CCNNNNNNNGG	2 cut(s)	72, 117
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	3 cut(s)	67, 81, 181
BseXI	GCAGC	1 cut(s)	81
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	72, 117
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	346
BspANI	GGCC	1 cut(s)	260
BspOI	GCTAGC	2 cut(s)	65, 80
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	67, 81, 181
BssECI	CCNNGG	2 cut(s)	116, 349
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	117, 135
Bst4CI	ACNGT	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	63, 78, 224
BstF5I	GGATG	2 cut(s)	154, 194
BstHHI	GCGC	3 cut(s)	88, 145, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 94, 266
BstNI	CCWGG	2 cut(s)	117, 135
BstSCI	CCNGG	2 cut(s)	115, 133
BstV1I	GCAGC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	154, 194
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 88
Cac8I	GCNNGC	3 cut(s)	63, 78, 224
CaiI	CAGNNNCTG	2 cut(s)	94, 140
CfoI	GCGC	3 cut(s)	88, 145, 364
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	7 cut(s)	65, 76, 80, 124, 222, 260, 282
CviKI_1	RGCY	7 cut(s)	65, 76, 80, 124, 222, 260, 282
CviQI	GTAC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	115, 133
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	328
FaiI	YATR	2 cut(s)	197, 326
FatI	CATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	161, 201
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	4 cut(s)	62, 72, 77, 379
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	3 cut(s)	87, 144, 363
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	3 cut(s)	88, 145, 364
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	3 cut(s)	86, 143, 362
HinP1I	GCGC	3 cut(s)	86, 143, 362
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	100, 375
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	117, 271
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	226, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 94, 266
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	3 cut(s)	86, 143, 362
LpnPI	CCDG	9 cut(s)	80, 94, 102, 120, 129, 147, 159, 162, 372
Lsp1109I	GCAGC	1 cut(s)	81
MaeI	CTAG	4 cut(s)	62, 72, 77, 379
MboII	GAAGA	2 cut(s)	18, 307
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	2 cut(s)	201, 227
MnlI	CCTC	4 cut(s)	114, 268, 312, 330
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	117, 135
MvaI	CCWGG	2 cut(s)	117, 135
MwoI	GCNNNNNNNGC	3 cut(s)	62, 94, 266
NheI	GCTAGC	2 cut(s)	61, 76
NlaIII	CATG	1 cut(s)	328
NsbI	TGCGCA	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	100, 375
PkrI	GCNGC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	115, 133
PspGI	CCWGG	2 cut(s)	115, 133
PstNI	CAGNNNCTG	2 cut(s)	94, 140
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SatI	GCNGC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	117, 135
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	2 cut(s)	224, 284
SmlI	CTYRAG	2 cut(s)	155, 329
SmoI	CTYRAG	2 cut(s)	155, 329
Sse9I	AATT	2 cut(s)	201, 227
SseBI	AGGCCT	1 cut(s)	260
SspMI	CTAG	4 cut(s)	62, 72, 77, 379
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	115, 133
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	273
TasI	AATT	2 cut(s)	201, 227
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	2 cut(s)	100, 375
TscAI	CASTG	2 cut(s)	58, 88
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	2 cut(s)	58, 88
XapI	RAATTY	1 cut(s)	201
XspI	CTAG	4 cut(s)	62, 72, 77, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.