Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Reverse (-)

12277528 .. 12278144

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G124800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGATTTCAATTCCCATTGTGTTGCTTTTTGTGTGCTCGGCATTGCTGTTCAATGTAGCGTTAGGGAGACATAACCCTAATGTTGATCATGAGGCACATCCGAAGGAAGTCTCACGACTTTGGTTCTACCTTGGGCCGCCTTTGACACCACCGCCGCCACCAGCACCAGTCGCGCAGCTGCCACCACAAGTTCCAGCACTGCCAACATGGAAGCCACCAACGCAAGAAGATTATGAAAAATGTTGGTCATCACTAACTGACATAGACAGATTAGTGGTAGACCTCATTTCTGCACTTTTAACTGGCGATTATAGTCGCATTGGACCAGATTGTTGCGCTGCCATCGATGGAATTGATCAGAATTGTTTTGGAGTGATGTTAGACCAGTTCAACAATAGATATTATGTTCCTGCCCTTAGACAAAGTTGCGCTGATCAAAGCTCTCCACCCAAGGCGCCTTCCAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

158

Amino Acids

17.28

Weight (kDa)

5.48

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	176
AciI	CCGC	3 cut(s)	140, 155, 158
AcyI	GRCGYC	1 cut(s)	458
AgsI	TTSAA	3 cut(s)	12, 55, 394
AluBI	AGCT	3 cut(s)	181, 444, 470
AluI	AGCT	3 cut(s)	181, 444, 470
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	2 cut(s)	64, 118
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	178, 181, 341
AspLEI	GCGC	4 cut(s)	178, 341, 434, 460
AspS9I	GGNCC	2 cut(s)	137, 326
AvaII	GGWCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	168, 190, 328
BccI	CCATC	2 cut(s)	344, 353
BclI	TGATCA	3 cut(s)	88, 358, 436
BcoDI	GTCTC	2 cut(s)	64, 118
BfoI	RGCGCY	1 cut(s)	461
BisI	GCNGC	5 cut(s)	140, 158, 179, 182, 342
BlsI	GCNGC	5 cut(s)	141, 159, 180, 183, 343
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	137, 326
BmiI	GGNNCC	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	133, 453
Bse1I	ACTGG	3 cut(s)	170, 310, 388
Bse3DI	GCAATG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	133, 453
BseGI	GGATG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	44
BseNI	ACTGG	3 cut(s)	170, 310, 388
BseXI	GCAGC	3 cut(s)	168, 190, 328
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	41
BsmAI	GTCTC	2 cut(s)	64, 118
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	88, 358, 436
BspACI	CCGC	3 cut(s)	140, 155, 158
BspANI	GGCC	1 cut(s)	139
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	3 cut(s)	170, 310, 388
BssECI	CCNNGG	2 cut(s)	133, 453
BssMI	GATC	3 cut(s)	88, 358, 436
BssNI	GRCGYC	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	133, 453
BstACI	GRCGYC	1 cut(s)	458
BstDEI	CTNAG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	4 cut(s)	178, 341, 434, 460
BstKTI	GATC	3 cut(s)	91, 361, 439
BstMAI	GTCTC	2 cut(s)	64, 118
BstMBI	GATC	3 cut(s)	88, 358, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 223
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	3 cut(s)	168, 190, 328
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	139
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	200
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	4 cut(s)	178, 341, 434, 460
Cfr13I	GGNCC	2 cut(s)	137, 326
ClaI	ATCGAT	1 cut(s)	348
CviAII	CATG	2 cut(s)	92, 210
CviJI	RGCY	5 cut(s)	139, 181, 217, 444, 470
CviKI_1	RGCY	5 cut(s)	139, 181, 217, 444, 470
DdeI	CTNAG	1 cut(s)	419
DinI	GGCGCC	1 cut(s)	459
DpnI	GATC	3 cut(s)	90, 360, 438
DpnII	GATC	3 cut(s)	88, 358, 436
Eco130I	CCWWGG	2 cut(s)	133, 453
Eco47I	GGWCC	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	133, 453
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
ErhI	CCWWGG	2 cut(s)	133, 453
FaeI	CATG	2 cut(s)	95, 213
FaiI	YATR	7 cut(s)	75, 93, 211, 237, 266, 315, 408
FatI	CATG	2 cut(s)	91, 209
FbaI	TGATCA	3 cut(s)	88, 358, 436
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	5 cut(s)	140, 158, 179, 182, 342
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	5 cut(s)	140, 158, 179, 182, 342
GlaI	GCGC	4 cut(s)	177, 340, 433, 459
GluI	GCNGC	5 cut(s)	140, 158, 179, 182, 342
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	139
HhaI	GCGC	4 cut(s)	178, 341, 434, 460
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	2 cut(s)	95, 213
Hin6I	GCGC	4 cut(s)	176, 339, 432, 458
HinP1I	GCGC	4 cut(s)	176, 339, 432, 458
HindIII	AAGCTT	1 cut(s)	468
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	105, 363
Hpy188III	TCNNGA	2 cut(s)	92, 117
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	100, 471
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 223
HpyF3I	CTNAG	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	95, 213
HspAI	GCGC	4 cut(s)	176, 339, 432, 458
KasI	GGCGCC	1 cut(s)	457
Ksp22I	TGATCA	3 cut(s)	88, 358, 436
Kzo9I	GATC	3 cut(s)	88, 358, 436
LpnPI	CCDG	7 cut(s)	177, 183, 210, 291, 342, 401, 426
Lsp1109I	GCAGC	3 cut(s)	168, 190, 328
MalI	GATC	3 cut(s)	90, 360, 438
MboI	GATC	3 cut(s)	88, 358, 436
MboII	GAAGA	2 cut(s)	16, 242
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	3 cut(s)	12, 354, 364
Mly113I	GGCGCC	1 cut(s)	458
MnlI	CCTC	2 cut(s)	88, 296
MseI	TTAA	2 cut(s)	302, 472
MspA1I	CMGCKG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	173, 223
NarI	GGCGCC	1 cut(s)	458
NdeII	GATC	3 cut(s)	88, 358, 436
NlaIII	CATG	2 cut(s)	95, 213
NlaIV	GGNNCC	1 cut(s)	459
NmeAIII	GCCGAG	1 cut(s)	20
PagI	TCATGA	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	141, 159, 180, 183, 343
PluTI	GGCGCC	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	137, 326
PvuII	CAGCTG	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	302, 472
SatI	GCNGC	5 cut(s)	140, 158, 179, 182, 342
Sau3AI	GATC	3 cut(s)	88, 358, 436
Sau96I	GGNCC	2 cut(s)	137, 326
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	5 cut(s)	135, 183, 288, 446, 472
SfoI	GGCGCC	1 cut(s)	459
SinI	GGWCC	1 cut(s)	326
Sse9I	AATT	3 cut(s)	12, 354, 364
SsiI	CCGC	3 cut(s)	140, 155, 158
SspDI	GGCGCC	1 cut(s)	457
StyI	CCWWGG	2 cut(s)	133, 453
TaqI	TCGA	1 cut(s)	348
TasI	AATT	3 cut(s)	12, 354, 364
TauI	GCSGC	2 cut(s)	142, 160
Tru1I	TTAA	2 cut(s)	302, 472
Tru9I	TTAA	2 cut(s)	302, 472
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	3 cut(s)	178, 181, 341
TspDTI	ATGAA	2 cut(s)	17, 252
TspRI	CASTG	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.