Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Reverse (-)

14388297 .. 14388621

Gene Structure 325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G36659.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTCTATCAAAAATGTGTTTTCACTTCTAGCGGTTCTATGTATCATAGTTTCTGTAAATGCTCAATTGCCTCAGTTTCCGGCTCAACTTCCTTTTCCGTTTCCGTTCCAACTGATTCCTGGATTACCTGATATAACTAAATGTTTCTCATCCGTGATGGATATTCCTGAATGCATTGCAGAGATTTCTCAATCCATTTTTACTGGAAAGTTTGGTAATTTAAGTCCGGCTTGTTGCAAAGCATTTTTGGACGCCGATAATTGCATACCGAATTCATTCCGTTTTTTCCTCCGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.91

Weight (kDa)

6.01

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	47 - 96	2.3e-08	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	275
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	120
BfaI	CTAG	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	80, 227
BsmI	GAATGC	1 cut(s)	176
BspACI	CCGC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	149
CseI	GACGC	1 cut(s)	260
CviJI	RGCY	2 cut(s)	83, 230
CviKI_1	RGCY	2 cut(s)	83, 230
DdeI	CTNAG	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	176
FaiI	YATR	4 cut(s)	40, 47, 134, 266
FalI	AAGNNNNNCTT	2 cut(s)	214, 246
FokI	GGATG	1 cut(s)	136
FspBI	CTAG	1 cut(s)	29
HapII	CCGG	2 cut(s)	80, 227
HgaI	GACGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	80, 227
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	1 cut(s)	167
HpyCH4V	TGCA	4 cut(s)	174, 179, 237, 264
HpyF3I	CTNAG	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	252
LpnPI	CCDG	7 cut(s)	93, 105, 132, 141, 180, 189, 240
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	29
MfeI	CAATTG	1 cut(s)	65
MluCI	AATT	4 cut(s)	65, 217, 259, 271
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	2 cut(s)	81, 299
Mph1103I	ATGCAT	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	1 cut(s)	221
MspI	CCGG	2 cut(s)	80, 227
MspR9I	CCNGG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	176
PctI	GAATGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	1 cut(s)	130
SfaNI	GCATC	1 cut(s)	284
Sse9I	AATT	4 cut(s)	65, 217, 259, 271
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	118
TasI	AATT	4 cut(s)	65, 217, 259, 271
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	4 cut(s)	87, 93, 142, 269
XapI	RAATTY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.