Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Forward (+)

1715904 .. 1716296

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG025800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCAATAGCCATGACAATGAAAATTGTAGCATTGTCTTCCCTGCTGCTAGTGGCATTACTCATCACCACCTTGCTAACCCAACCAGGAATAGCCAATGCGCAGTTGCCACAGACTCCTCCTTCGATTCCAGGCCTGTTTCCACCAGGAACTCCACAAGATGCACTTAAATGTTGGTCATCTCTAACCGGCATCAGTGGATGTGTTATGGAAATCTTTCAATCTGTTTTCAGCTTGCAATTAGGCACCATTGGTGCCGACTGTTGCAAGGCCTTCCTTTCTATTGAGGAAAGCTGTTTGCCCAAAATGTTTCCTCTGAATCCTTTCTTCCCTCCTTTGCTCAAGAACTTTTGTGCTCTCCAAGGAGGTCCTGCTCCCCCAGCAAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

130

Amino Acids

13.73

Weight (kDa)

7.55

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	57 - 118	3.5e-16	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	102
AccB1I	GGYRCC	2 cut(s)	245, 254
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	3 cut(s)	85, 130, 145
AluBI	AGCT	2 cut(s)	234, 294
AluI	AGCT	2 cut(s)	234, 294
Alw21I	GWGCWC	1 cut(s)	358
AoxI	GGCC	2 cut(s)	133, 270
ApeKI	GCWGC	1 cut(s)	46
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
Asp700I	GAANNNNTTC	2 cut(s)	216, 323
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	368
BanI	GGYRCC	2 cut(s)	245, 254
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	33
BciT130I	CCWGG	3 cut(s)	87, 132, 147
BfaI	CTAG	2 cut(s)	50, 391
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	3 cut(s)	87, 132, 147
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	2 cut(s)	247, 256
BmrFI	CCNGG	3 cut(s)	87, 132, 147
BmsI	GCATC	2 cut(s)	151, 201
BpiI	GAAGAC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	188
BseBI	CCWGG	3 cut(s)	87, 132, 147
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	33
BseYI	CCCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	135, 272
BshNI	GGYRCC	2 cut(s)	245, 254
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	189
BsnI	GGCC	2 cut(s)	135, 272
Bsp1286I	GDGCHC	1 cut(s)	358
BspANI	GGCC	2 cut(s)	135, 272
BspLI	GGNNCC	2 cut(s)	247, 256
BspT107I	GGYRCC	2 cut(s)	245, 254
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	3 cut(s)	87, 132, 147
Bst4CI	ACNGT	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	3 cut(s)	87, 132, 147
BstSCI	CCNGG	3 cut(s)	85, 130, 145
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	135, 272
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	368
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	11, 95, 135, 234, 272, 294
CviKI_1	RGCY	6 cut(s)	11, 95, 135, 234, 272, 294
Eco130I	CCWWGG	1 cut(s)	361
Eco147I	AGGCCT	2 cut(s)	135, 272
Eco47I	GGWCC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRII	CCWGG	3 cut(s)	85, 130, 145
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	16
FaiI	YATR	2 cut(s)	14, 209
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	2 cut(s)	50, 391
FspI	TGCGCA	1 cut(s)	102
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	47
GsaI	CCCAGC	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	135, 272
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	4 cut(s)	115, 127, 319, 387
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	132, 283
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	164, 238, 267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	2 cut(s)	151, 201
MaeI	CTAG	2 cut(s)	50, 391
MboII	GAAGA	2 cut(s)	30, 319
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	2 cut(s)	24, 239
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	5 cut(s)	129, 280, 324, 342, 359
MroXI	GAANNNNTTC	2 cut(s)	216, 323
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	2 cut(s)	17, 169
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	3 cut(s)	87, 132, 147
MvaI	CCWGG	3 cut(s)	87, 132, 147
MwoI	GCNNNNNNNGC	1 cut(s)	380
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	2 cut(s)	247, 256
NsbI	TGCGCA	1 cut(s)	102
PceI	AGGCCT	2 cut(s)	135, 272
PdmI	GAANNNNTTC	2 cut(s)	216, 323
PfeI	GAWTC	3 cut(s)	127, 319, 387
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	3 cut(s)	85, 130, 145
PspFI	CCCAGC	1 cut(s)	379
PspGI	CCWGG	3 cut(s)	85, 130, 145
PspN4I	GGNNCC	2 cut(s)	247, 256
PspPI	GGNCC	1 cut(s)	368
PspPPI	RGGWCCY	1 cut(s)	368
RseI	CAYNNNNRTG	2 cut(s)	17, 169
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	47
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	3 cut(s)	87, 132, 147
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	4 cut(s)	74, 236, 296, 370
SfaNI	GCATC	2 cut(s)	151, 201
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	2 cut(s)	17, 169
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	24, 239
SseBI	AGGCCT	2 cut(s)	135, 272
SspMI	CTAG	2 cut(s)	50, 391
StuI	AGGCCT	2 cut(s)	135, 272
StyD4I	CCNGG	3 cut(s)	85, 130, 145
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	24, 239
TfiI	GAWTC	3 cut(s)	127, 319, 387
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	368
XmnI	GAANNNNTTC	2 cut(s)	216, 323
XspI	CTAG	2 cut(s)	50, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.