Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Forward (+)

1721067 .. 1721447

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG025900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCAATGAAAATTGTAGCATTATCTGCACTGCTACTAGTGGCATTACTCACCACCTTGCTATCCCAATCAGGAATAGCCAATGCGCAGTCACCACAGAGTCCTCCTTCGGTTCCAGGCTTGCTTCCACCAGGAACTCCGAATGATGTCCTTAAGTGTTGGTCATCTCTAAGTGGCATTAGTGGATGTGTTATGGAAATCTTTCAATCTGTTTTCAGCTTGCAATTAGGCACCATTGGTGCCGACTGTTGCAAGGCCTTCCTTTCTATCGAGGAAAGCTGTTGGCCCAAAATGTTTCCTCTGACTCCTTTCTTCCCTCCCTTGCTCAAGAACATTTGTGAGCTCCAAGGAAGAGGTCCTGCACCCCCAGCATTCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

126

Amino Acids

13.26

Weight (kDa)

6.08

Isoelectric Point (pI)

75.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	52 - 113	3.8e-17	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	87
AccB1I	GGYRCC	2 cut(s)	230, 239
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	206
AhlI	ACTAGT	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	115, 130
AluBI	AGCT	3 cut(s)	219, 279, 343
AluI	AGCT	3 cut(s)	219, 279, 343
Alw21I	GWGCWC	1 cut(s)	345
AoxI	GGCC	2 cut(s)	255, 284
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	285, 356
AsuHPI	GGTGA	2 cut(s)	43, 84
AvaII	GGWCC	1 cut(s)	356
BanI	GGYRCC	2 cut(s)	230, 239
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	345
BciT130I	CCWGG	2 cut(s)	117, 132
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	117, 132
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	285, 356
BmiI	GGNNCC	3 cut(s)	114, 232, 241
BmrFI	CCNGG	2 cut(s)	117, 132
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	117, 132
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	2 cut(s)	12, 345
BshFI	GGCC	2 cut(s)	257, 286
BshNI	GGYRCC	2 cut(s)	230, 239
BsiHKAI	GWGCWC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	257, 286
Bsp1286I	GDGCHC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	257, 286
BspLI	GGNNCC	3 cut(s)	114, 232, 241
BspT107I	GGYRCC	2 cut(s)	230, 239
BspTI	CTTAAG	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	2 cut(s)	117, 132
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	346
BstAFI	CTTAAG	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	122, 221
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 368
BstNI	CCWGG	2 cut(s)	117, 132
BstSCI	CCNGG	2 cut(s)	115, 130
BsuRI	GGCC	2 cut(s)	257, 286
BtsCI	GGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	122, 221
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	285, 356
CviJI	RGCY	7 cut(s)	80, 120, 219, 257, 279, 286, 343
CviKI_1	RGCY	7 cut(s)	80, 120, 219, 257, 279, 286, 343
DdeI	CTNAG	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	115, 130
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	346
FaiI	YATR	1 cut(s)	194
FokI	GGATG	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	38
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	257, 286
HhaI	GCGC	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	2 cut(s)	100, 304
HphI	GGTGA	2 cut(s)	43, 84
Hpy188I	TCNGA	2 cut(s)	141, 303
Hpy188III	TCNNGA	2 cut(s)	72, 328
HpyAV	CCTTC	2 cut(s)	117, 268
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	29, 223, 252, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 368
HpyF3I	CTNAG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	348
LpnPI	CCDG	6 cut(s)	57, 102, 117, 129, 144, 372
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	90
MboII	GAAGA	2 cut(s)	304, 363
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	2 cut(s)	12, 224
MlyI	GAGTC	2 cut(s)	109, 298
MnlI	CCTC	5 cut(s)	114, 265, 309, 327, 347
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	376
MspCI	CTTAAG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	117, 132
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	2 cut(s)	117, 132
MwoI	GCNNNNNNNGC	2 cut(s)	26, 368
NlaIV	GGNNCC	3 cut(s)	114, 232, 241
NmuCI	GTSAC	1 cut(s)	90
NsbI	TGCGCA	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	257
PctI	GAATGC	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	201
PleI	GAGTC	2 cut(s)	108, 298
PpsI	GAGTC	2 cut(s)	108, 298
PpuMI	RGGWCCY	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	115, 130
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	115, 130
PspN4I	GGNNCC	3 cut(s)	114, 232, 241
PspPI	GGNCC	2 cut(s)	285, 356
PspPPI	RGGWCCY	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	285, 356
SchI	GAGTC	2 cut(s)	109, 298
ScrFI	CCNGG	2 cut(s)	117, 132
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	5 cut(s)	59, 221, 281, 345, 358
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	152, 326
SmoI	CTYRAG	2 cut(s)	152, 326
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	2 cut(s)	12, 224
SseBI	AGGCCT	1 cut(s)	257
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	115, 130
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	12, 224
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.