Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Forward (+)

56377714 .. 56386342

Gene Structure 8629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0472700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGAGAGAGGGAAGGAAAAGACTTTGGTTGAAATAGTGTCGGTTTATGACTACTACTCTAAAGTCTCTGCCTTTCTTGTTGAATACATGCTCCTCCGCACTTGTGAAGAGAAAACCCACAAAGGTTTTGAAAGATTGGACCTTTTGAGATGGGGGGAGAGGAACCGAAACGGAAAACGACCTGCCGTTTGTGAGGAGTCTAAGGGGTTCTGCTTGAGGATTCAGAGTCGTGAGGATCTCAAAGATGGGAAAAAGGAACTTCTGCCGGCAGCTGTGAGGAAGTATGGAGATCAAATGGCAGACCATATATTCTTGAAGGTTCCCAATTGTGGAAAACATTGGAAAATAGAATTGAGAACATCACCTCGTCGTGACCGGATGTGGTTAGAGAAGGGATGGGAAGAGTTTGCTAGCTTTTACTTACTGGACCAAGGTGACTTGGCAACCTTCAGCTCTGAAGGCGAACATGACTATTTCCGAGTGCGCATCTTTAGTTGGGATGATATGGAAATATATCACCCTATTCGTGGAGTAGGAGTTGATGTCAGTGGACCAAAGAGGAAAGAAACAAGAGTTGAGGCTGAAGCTGAAGCTGAAGCCAGAGCCATTTCAATTTCCCCCAGATCCTCTGCTGATGAACACCAATATGATATTTCCAAAGTGAGCAGTTTCAGATCTGACAAGCCATGTCTTAATGTCCAAATCACAGCTACATCCTTAACCAATCGTGTGTTCATAAATCCAGAATTTGCATTGGAACATTTCTGTAAAGAAGGCTCTTGTTGTGACTTGTCCTTACAGAATACTCTAGGTGACAGGATTTGGACGGTTCAGTGCATTTCTTACACAATAATTGATGGAAGAATGCGAACAGTAATATCAGGAGCTGGTTGGAAATCCTTTTGGCAGGACAATCATCTAGAAGAGGGTGACGTCCTAGTGTTGGAGTTGATAGAGGAACGTAGCTGCAGAGTTTCGATAATCCGGGCTCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

333

Amino Acids

38.63

Weight (kDa)

6.14

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	85 - 166	5.6e-09	B3 DNA binding domain
B3	PF02362	242 - 331	3.3e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	939
Acc16I	TGCGCA	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	193
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	2 cut(s)	246, 621
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	5 cut(s)	436, 480, 606, 612, 618
AcyI	GRCGYC	1 cut(s)	936
AfiI	CCNNNNNNNGG	3 cut(s)	332, 530, 946
AgsI	TTSAA	5 cut(s)	35, 86, 134, 319, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	8 cut(s)	275, 417, 456, 590, 596, 713, 890, 969
AluI	AGCT	8 cut(s)	275, 417, 456, 590, 596, 713, 890, 969
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	246, 621
AlwNI	CAGNNNCTG	1 cut(s)	890
ApeKI	GCWGC	2 cut(s)	272, 969
ApoI	RAATTY	1 cut(s)	749
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	3 cut(s)	142, 430, 554
AsuC2I	CCSGG	1 cut(s)	989
AsuHPI	GGTGA	5 cut(s)	357, 449, 512, 827, 944
AsuNHI	GCTAGC	1 cut(s)	413
AvaII	GGWCC	3 cut(s)	142, 430, 554
BanII	GRGCYC	1 cut(s)	994
BbvI	GCAGC	2 cut(s)	284, 956
BccI	CCATC	4 cut(s)	147, 242, 393, 854
BceAI	ACGGC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	989
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	4 cut(s)	414, 812, 923, 941
BfmI	CTRYAG	1 cut(s)	970
BfuAI	ACCTGC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	677
BisI	GCNGC	2 cut(s)	273, 970
BlsI	GCNGC	2 cut(s)	274, 971
Bme1390I	CCNGG	1 cut(s)	989
Bme18I	GGWCC	3 cut(s)	142, 430, 554
BmgT120I	GGNCC	3 cut(s)	142, 430, 554
BmiI	GGNNCC	2 cut(s)	167, 324
BmrFI	CCNGG	1 cut(s)	989
BmsI	GCATC	1 cut(s)	498
BmtI	GCTAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	989
BsaHI	GRCGYC	1 cut(s)	936
BsaJI	CCNNGG	1 cut(s)	433
BsaWI	WCCGGW	1 cut(s)	378
BsaXI	ACNNNNNCTCC	4 cut(s)	525, 531, 555, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 530, 946
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	4 cut(s)	387, 404, 508, 716
BseLI	CCNNNNNNNGG	3 cut(s)	332, 530, 946
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	3 cut(s)	20, 86, 212
BseXI	GCAGC	2 cut(s)	284, 956
BsiSI	CCGG	3 cut(s)	269, 379, 988
BslI	CCNNNNNNNGG	3 cut(s)	332, 530, 946
BsmAI	GTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	873
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp143I	GATC	4 cut(s)	238, 292, 626, 677
BspACI	CCGC	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	167, 324
BspMAI	CTGCAG	1 cut(s)	974
BspMI	ACCTGC	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	246, 621
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	4 cut(s)	238, 292, 626, 677
BssNI	GRCGYC	1 cut(s)	936
BssT1I	CCWWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	832, 877
Bst6I	CTCTTC	3 cut(s)	105, 399, 921
BstACI	GRCGYC	1 cut(s)	936
BstC8I	GCNNGC	2 cut(s)	270, 415
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	4 cut(s)	387, 404, 508, 716
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	4 cut(s)	241, 295, 629, 680
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	238, 292, 626, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	987
BstSFI	CTRYAG	1 cut(s)	970
BstV1I	GCAGC	2 cut(s)	284, 956
BstX2I	RGATCY	3 cut(s)	238, 626, 677
BstYI	RGATCY	3 cut(s)	238, 626, 677
BtsCI	GGATG	4 cut(s)	387, 404, 508, 716
BtsIMutI	CAGTG	2 cut(s)	556, 842
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	270, 415
CaiI	CAGNNNCTG	1 cut(s)	890
CfoI	GCGC	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	142, 430, 554
CviAII	CATG	3 cut(s)	91, 470, 690
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	4 cut(s)	240, 294, 628, 679
DpnII	GATC	4 cut(s)	238, 292, 626, 677
Eam1104I	CTCTTC	3 cut(s)	105, 399, 921
EarI	CTCTTC	3 cut(s)	105, 399, 921
Eco130I	CCWWGG	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	994
Eco47I	GGWCC	3 cut(s)	142, 430, 554
Eco57I	CTGAAG	5 cut(s)	436, 480, 606, 612, 618
EcoT14I	CCWWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	994
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	3 cut(s)	94, 473, 693
FatI	CATG	3 cut(s)	90, 469, 689
Fnu4HI	GCNGC	2 cut(s)	273, 970
FokI	GGATG	4 cut(s)	394, 411, 515, 703
FriOI	GRGCYC	1 cut(s)	994
Fsp4HI	GCNGC	2 cut(s)	273, 970
FspAI	RTGCGCAY	1 cut(s)	488
FspBI	CTAG	4 cut(s)	414, 812, 923, 941
FspI	TGCGCA	1 cut(s)	488
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	2 cut(s)	273, 970
HapII	CCGG	3 cut(s)	269, 379, 988
HhaI	GCGC	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	936
Hin1II	CATG	3 cut(s)	94, 473, 693
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	3 cut(s)	200, 223, 229
HpaII	CCGG	3 cut(s)	269, 379, 988
HphI	GGTGA	5 cut(s)	357, 449, 512, 827, 944
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	5 cut(s)	228, 460, 482, 677, 682
Hpy188III	TCNNGA	6 cut(s)	233, 316, 374, 746, 885, 923
Hpy8I	GTNNAC	1 cut(s)	554
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	6 cut(s)	10, 313, 388, 455, 460, 770
HpyCH4III	ACNGT	2 cut(s)	832, 877
HpyCH4IV	ACGT	2 cut(s)	936, 964
HpyCH4V	TGCA	3 cut(s)	755, 840, 972
HpyF10VI	GCNNNNNNNGC	1 cut(s)	462
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	936, 964
Hsp92I	GRCGYC	1 cut(s)	936
Hsp92II	CATG	3 cut(s)	94, 473, 693
HspAI	GCGC	1 cut(s)	487
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	238, 292, 626, 677
LmnI	GCTCC	2 cut(s)	99, 887
Lsp1109I	GCAGC	2 cut(s)	284, 956
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	4 cut(s)	414, 812, 923, 941
MaeII	ACGT	2 cut(s)	936, 964
MaeIII	GTNAC	5 cut(s)	374, 437, 788, 815, 932
MalI	GATC	4 cut(s)	240, 294, 628, 679
MboI	GATC	4 cut(s)	238, 292, 626, 677
MboII	GAAGA	4 cut(s)	122, 416, 876, 938
MfeI	CAATTG	1 cut(s)	328
MflI	RGATCY	3 cut(s)	238, 626, 677
MhlI	GDGCHC	1 cut(s)	994
MluCI	AATT	5 cut(s)	328, 353, 615, 749, 855
MlyI	GAGTC	2 cut(s)	209, 238
MmeI	TCCRAC	2 cut(s)	875, 927
MroNI	GCCGGC	1 cut(s)	268
MseI	TTAA	2 cut(s)	696, 722
MslI	CAYNNNNRTG	1 cut(s)	648
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	269, 379, 988
MspR9I	CCNGG	1 cut(s)	989
MunI	CAATTG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	873
MwoI	GCNNNNNNNGC	1 cut(s)	462
NaeI	GCCGGC	1 cut(s)	270
NciI	CCSGG	1 cut(s)	989
NdeII	GATC	4 cut(s)	238, 292, 626, 677
NgoMIV	GCCGGC	1 cut(s)	268
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	3 cut(s)	94, 473, 693
NlaIV	GGNNCC	2 cut(s)	167, 324
NmuCI	GTSAC	5 cut(s)	374, 437, 788, 815, 932
NsbI	TGCGCA	1 cut(s)	488
NspI	RCATGY	1 cut(s)	94
PctI	GAATGC	1 cut(s)	873
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	274, 971
PleI	GAGTC	2 cut(s)	208, 237
PpsI	GAGTC	2 cut(s)	208, 237
PspN4I	GGNNCC	2 cut(s)	167, 324
PspPI	GGNCC	3 cut(s)	142, 430, 554
PstI	CTGCAG	1 cut(s)	974
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	3 cut(s)	238, 626, 677
PvuII	CAGCTG	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	648
SaqAI	TTAA	2 cut(s)	696, 722
SatI	GCNGC	2 cut(s)	273, 970
Sau3AI	GATC	4 cut(s)	238, 292, 626, 677
Sau96I	GGNCC	3 cut(s)	142, 430, 554
SchI	GAGTC	2 cut(s)	209, 238
ScrFI	CCNGG	1 cut(s)	989
SduI	GDGCHC	1 cut(s)	994
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	1 cut(s)	970
SinI	GGWCC	3 cut(s)	142, 430, 554
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	5 cut(s)	328, 353, 615, 749, 855
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	4 cut(s)	414, 812, 923, 941
StyD4I	CCNGG	1 cut(s)	987
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	832, 877
TaiI	ACGT	2 cut(s)	939, 967
TaqI	TCGA	1 cut(s)	980
TasI	AATT	5 cut(s)	328, 353, 615, 749, 855
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	696, 722
Tru9I	TTAA	2 cut(s)	696, 722
TscAI	CASTG	2 cut(s)	556, 842
TseFI	GTSAC	5 cut(s)	374, 437, 788, 815, 932
TseI	GCWGC	2 cut(s)	272, 969
Tsp45I	GTSAC	5 cut(s)	374, 437, 788, 815, 932
TspDTI	ATGAA	2 cut(s)	654, 727
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	556, 842
VpaK11BI	GGWCC	3 cut(s)	142, 430, 554
XapI	RAATTY	1 cut(s)	749
XbaI	TCTAGA	1 cut(s)	922
XceI	RCATGY	1 cut(s)	94
XspI	CTAG	4 cut(s)	414, 812, 923, 941
ZraI	GACGTC	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.