AT5G36330

Prolamin-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
14329098 .. 14330209
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36330.1

Sequence Viewer

Length: 369 bp
ATGACGAAAAGGGGTTACATTGCGTCTATCAAAAATGTGTTTTCACTTCTAGCGGTTCTATGTATCATAGTTTCTGTAAATGCTCAATTGCCTCAGTTTCCGGCTCAGCTTCCTTTTCTGTTTCCGTTCCAACTGATTCCTGGATTACCTGATATAACAAAATGTTTCTCATCCGTGATGGATATTCCTGGATGCATTGCAGAGATTTCTCAATCCATTTTCACTGGAAAGTTCGGTAATTTAGGTCCGACTTGTTGCAAAACATTTCTGGACGCCGATAATTGCATACCGAAAATTCCATTCATTCCACCGATGCTAAAGGAACAATGTTCAAGAGTTGCCGGTGCAACTCCTCCCATACCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.2

Weight (kDa)

8.75

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 54 - 99 2.7e-07 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 273
AgsI TTSAA 1 cut(s) 333
AjnI CCWGG 2 cut(s) 139, 187
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
ApoI RAATTY 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 245
AvaII GGWCC 1 cut(s) 245
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 141, 189
BfaI CTAG 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 105
Bme1390I CCNGG 2 cut(s) 141, 189
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 141, 189
BmsI GCATC 2 cut(s) 182, 303
Bpu1102I GCTNAGC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 273
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 2 cut(s) 18, 195
BseBI CCWGG 2 cut(s) 141, 189
BseGI GGATG 2 cut(s) 170, 197
BseMI GCAATG 2 cut(s) 18, 195
BseMII CTCAG 2 cut(s) 107, 119
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 101, 342
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 1 cut(s) 53
BspCNI CTCAG 2 cut(s) 106, 118
BsrDI GCAATG 2 cut(s) 18, 195
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 341
BssNI GRCGYC 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 141, 189
BstACI GRCGYC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 93, 105
BstF5I GGATG 2 cut(s) 170, 197
BstNI CCWGG 2 cut(s) 141, 189
BstSCI CCNGG 2 cut(s) 139, 187
BtsCI GGATG 2 cut(s) 170, 197
BtsIMutI CAGTG 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 2 cut(s) 12, 281
CviJI RGCY 2 cut(s) 104, 109
CviKI_1 RGCY 2 cut(s) 104, 109
DdeI CTNAG 2 cut(s) 93, 105
Eco47I GGWCC 1 cut(s) 245
EcoRII CCWGG 2 cut(s) 139, 187
EcoT22I ATGCAT 1 cut(s) 197
FaiI YATR 5 cut(s) 61, 68, 155, 287, 359
FokI GGATG 2 cut(s) 157, 204
FspBI CTAG 1 cut(s) 50
HapII CCGG 2 cut(s) 101, 342
HgaI GACGC 2 cut(s) 12, 281
Hin1I GRCGYC 1 cut(s) 273
HinfI GANTC 1 cut(s) 136
HpaII CCGG 2 cut(s) 101, 342
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 2 cut(s) 269, 333
HpyCH4V TGCA 5 cut(s) 195, 200, 258, 285, 347
HpyF3I CTNAG 2 cut(s) 93, 105
Hsp92I GRCGYC 1 cut(s) 273
LpnPI CCDG 9 cut(s) 114, 126, 153, 162, 174, 201, 210, 254, 355
LweI GCATC 2 cut(s) 182, 303
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 14
MfeI CAATTG 1 cut(s) 86
MluCI AATT 4 cut(s) 86, 238, 280, 294
MmeI TCCRAC 2 cut(s) 154, 272
MnlI CCTC 2 cut(s) 102, 363
Mph1103I ATGCAT 1 cut(s) 197
MspI CCGG 2 cut(s) 101, 342
MspR9I CCNGG 2 cut(s) 141, 189
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 2 cut(s) 141, 189
NsiI ATGCAT 1 cut(s) 197
PfeI GAWTC 1 cut(s) 136
PfoI TCCNGGA 2 cut(s) 139, 187
Psp6I CCWGG 2 cut(s) 139, 187
PspGI CCWGG 2 cut(s) 139, 187
PspPI GGNCC 1 cut(s) 245
Sau96I GGNCC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 141, 189
SetI ASST 3 cut(s) 111, 151, 247
SfaNI GCATC 2 cut(s) 182, 303
SinI GGWCC 1 cut(s) 245
Sse9I AATT 4 cut(s) 86, 238, 280, 294
SsiI CCGC 1 cut(s) 53
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 139, 187
TasI AATT 4 cut(s) 86, 238, 280, 294
TfiI GAWTC 1 cut(s) 136
TscAI CASTG 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 292
TspGWI ACGGA 2 cut(s) 114, 163
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.