Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Forward (+)

1588189 .. 1588575

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG026200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCAATGAAAATTGTAGCATTGTCTTACCTGCTGCTAGTGGCATTACTCACCACCACCTTGCTAACCCAACCAGGAATAGCCAATAATGCGCAGTTGCCACAGACTCCTCCTTCAAATATTCCAGGCCTGTTTCCACCAGGAACTCCACAGGATGCACTTAAATGTTGGTCATCTCTAACCGGCATTAGTGGATGTGTTATGGAAATCTTTCAGTCTGTTTTCAGCTTGCAATTAGGCACCATTGGTGCCGACTGTTGCAAGGCCTTCCTTTCTATCGAGGAAAGCTGTTTGCCCAAAATGTTTCCTCTGACTCCTTTCTTCCCTCCTTTGCTCAAGAACTTTTGTGCTCTCCAAGGAGGTCCTGCTCCCCCAGCAAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

128

Amino Acids

13.56

Weight (kDa)

7.55

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	55 - 116	3.4e-16	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	239, 248
AgsI	TTSAA	1 cut(s)	117
AjnI	CCWGG	3 cut(s)	73, 124, 139
AluBI	AGCT	2 cut(s)	228, 288
AluI	AGCT	2 cut(s)	228, 288
Alw21I	GWGCWC	1 cut(s)	352
AoxI	GGCC	2 cut(s)	127, 264
ApeKI	GCWGC	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	362
BanI	GGYRCC	2 cut(s)	239, 248
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	21
BciT130I	CCWGG	3 cut(s)	75, 126, 141
BfaI	CTAG	2 cut(s)	38, 385
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	3 cut(s)	75, 126, 141
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	241, 250
BmrFI	CCNGG	3 cut(s)	75, 126, 141
BmsI	GCATC	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	75, 126, 141
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	160, 200
BseMI	GCAATG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	373
BshFI	GGCC	2 cut(s)	129, 266
BshNI	GGYRCC	2 cut(s)	239, 248
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	183
BsnI	GGCC	2 cut(s)	129, 266
Bsp1286I	GDGCHC	1 cut(s)	352
BspANI	GGCC	2 cut(s)	129, 266
BspLI	GGNNCC	2 cut(s)	241, 250
BspMI	ACCTGC	1 cut(s)	39
BspT107I	GGYRCC	2 cut(s)	239, 248
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	3 cut(s)	75, 126, 141
Bst4CI	ACNGT	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	160, 200
BstHHI	GCGC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 374
BstNI	CCWGG	3 cut(s)	75, 126, 141
BstSCI	CCNGG	3 cut(s)	73, 124, 139
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	129, 266
BtsCI	GGATG	2 cut(s)	160, 200
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	362
CviJI	RGCY	5 cut(s)	83, 129, 228, 266, 288
CviKI_1	RGCY	5 cut(s)	83, 129, 228, 266, 288
Eco130I	CCWWGG	1 cut(s)	355
Eco147I	AGGCCT	2 cut(s)	129, 266
Eco47I	GGWCC	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	3 cut(s)	73, 124, 139
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaiI	YATR	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	167, 207
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	38, 385
FspI	TGCGCA	1 cut(s)	93
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	129, 266
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	3 cut(s)	106, 313, 381
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	123, 277
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	158, 232, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 374
HspAI	GCGC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	38, 385
MboII	GAAGA	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	2 cut(s)	12, 233
MlyI	GAGTC	2 cut(s)	100, 307
MnlI	CCTC	5 cut(s)	120, 274, 318, 336, 353
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	163
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	3 cut(s)	75, 126, 141
MvaI	CCWGG	3 cut(s)	75, 126, 141
MwoI	GCNNNNNNNGC	2 cut(s)	89, 374
NlaIV	GGNNCC	2 cut(s)	241, 250
NsbI	TGCGCA	1 cut(s)	93
PceI	AGGCCT	2 cut(s)	129, 266
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	2 cut(s)	100, 307
PpsI	GAGTC	2 cut(s)	100, 307
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	3 cut(s)	73, 124, 139
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	3 cut(s)	73, 124, 139
PspN4I	GGNNCC	2 cut(s)	241, 250
PspPI	GGNCC	1 cut(s)	362
PspPPI	RGGWCCY	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	35
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	100, 307
ScrFI	CCNGG	3 cut(s)	75, 126, 141
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	5 cut(s)	33, 62, 230, 290, 364
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	12, 233
SseBI	AGGCCT	2 cut(s)	129, 266
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	2 cut(s)	38, 385
StuI	AGGCCT	2 cut(s)	129, 266
StyD4I	CCNGG	3 cut(s)	73, 124, 139
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	12, 233
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	2 cut(s)	38, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.