Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003367.1

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Forward (+)

12577 .. 13417

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003367.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggcaatgaaaattgtagcattgtcttacctgctgctagtggcattactcaccaccaccttgctaacccaaccaggaatagccaatgcgcagttgccacagactcctccttcaaatattccaggcctgtttccaccaggaactccgcaggatgcacttaaatgttggtcatctctaaccggcattagtggatgtgttatggaaatctttcagtctgttttcagcttgcaattaggcaccattggtgccgactgttgcaaggccttcctttctatcgaggaaagctgtttgcccaaaatgtttcctctgactcctttcttccctcctttgctcaagaacttttgtgctctccaaggagttctgaggagctgtgtggcggtgaggatttggaggatctgggcggcttgtgattctggtggggtgcgtggcaaggccaagcggtggtcgttgaatactgggttggatcagcgtacgtggtcggcgtggctagttacggcggataggcagacaggcggtggtagcagatggtgctacacggacacacgaggagatgaagtttgggcctactccaaattttgttgggccttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

196

Amino Acids

21.47

Weight (kDa)

8.87

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	236, 245
AccB7I	CCANNNNNTGG	1 cut(s)	441
AciI	CCGC	6 cut(s)	146, 377, 401, 439, 497, 513
AclWI	GGATC	2 cut(s)	401, 471
AcsI	RAATTY	1 cut(s)	572
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	114, 451
AjnI	CCWGG	3 cut(s)	73, 121, 136
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	3 cut(s)	225, 285, 369
AluI	AGCT	3 cut(s)	225, 285, 369
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	401, 471
AoxI	GGCC	5 cut(s)	124, 261, 432, 561, 582
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	561, 582
AsuHPI	GGTGA	2 cut(s)	43, 391
BanI	GGYRCC	2 cut(s)	236, 245
BauI	CACGAG	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	519
BceAI	ACGGC	1 cut(s)	510
BciT130I	CCWGG	3 cut(s)	75, 123, 138
BfaI	CTAG	2 cut(s)	38, 488
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	2 cut(s)	35, 402
BlsI	GCNGC	2 cut(s)	36, 403
Bme1390I	CCNGG	3 cut(s)	75, 123, 138
BmgT120I	GGNCC	2 cut(s)	561, 582
BmiI	GGNNCC	2 cut(s)	238, 247
BmrFI	CCNGG	3 cut(s)	75, 123, 138
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	317
BsaAI	YACGTR	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	75, 123, 138
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	157, 197
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	3 cut(s)	96, 379, 561
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	5 cut(s)	126, 263, 434, 563, 584
BshNI	GGYRCC	2 cut(s)	236, 245
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	180
BsiWI	CGTACG	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	441
BsnI	GGCC	5 cut(s)	126, 263, 434, 563, 584
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	393, 463
BspACI	CCGC	6 cut(s)	146, 377, 401, 439, 497, 513
BspANI	GGCC	5 cut(s)	126, 263, 434, 563, 584
BspCNI	CTCAG	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	238, 247
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	2 cut(s)	401, 471
BspT107I	GGYRCC	2 cut(s)	236, 245
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	393, 463
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	352
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	3 cut(s)	75, 123, 138
Bst4CI	ACNGT	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	528
BstBAI	YACGTR	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	157, 197
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	2 cut(s)	396, 466
BstMBI	GATC	2 cut(s)	393, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	519, 528
BstNI	CCWGG	3 cut(s)	75, 123, 138
BstSCI	CCNGG	3 cut(s)	73, 121, 136
BstV1I	GCAGC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BsuRI	GGCC	5 cut(s)	126, 263, 434, 563, 584
BtsCI	GGATG	2 cut(s)	157, 197
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	561, 582
Csp6I	GTAC	1 cut(s)	471
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	2 cut(s)	395, 465
DpnII	GATC	2 cut(s)	393, 463
EciI	GGCGGA	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	352
Eco147I	AGGCCT	2 cut(s)	126, 263
EcoRII	CCWGG	3 cut(s)	73, 121, 136
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaiI	YATR	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	35, 402
FokI	GGATG	2 cut(s)	164, 204
Fsp4HI	GCNGC	2 cut(s)	35, 402
FspBI	CTAG	2 cut(s)	38, 488
FspI	TGCGCA	1 cut(s)	90
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	2 cut(s)	35, 402
HaeIII	GGCC	5 cut(s)	126, 263, 434, 563, 584
HapII	CCGG	1 cut(s)	180
HhaI	GCGC	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	3 cut(s)	103, 310, 410
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	2 cut(s)	43, 391
Hpy188I	TCNGA	2 cut(s)	309, 363
Hpy188III	TCNNGA	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	120, 274
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	3 cut(s)	155, 229, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	519, 528
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	1 cut(s)	473
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	393, 463
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	38, 488
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	395, 465
MboI	GATC	2 cut(s)	393, 463
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	3 cut(s)	12, 230, 572
MlyI	GAGTC	2 cut(s)	97, 304
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	8 cut(s)	117, 271, 315, 333, 357, 375, 384, 539
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	3 cut(s)	75, 123, 138
MvaI	CCWGG	3 cut(s)	75, 123, 138
MwoI	GCNNNNNNNGC	2 cut(s)	519, 528
NdeII	GATC	2 cut(s)	393, 463
NlaIV	GGNNCC	2 cut(s)	238, 247
NsbI	TGCGCA	1 cut(s)	90
PceI	AGGCCT	2 cut(s)	126, 263
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	410
Pfl23II	CGTACG	1 cut(s)	470
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	36, 403
PleI	GAGTC	2 cut(s)	97, 304
PpsI	GAGTC	2 cut(s)	97, 304
Ppu21I	YACGTR	1 cut(s)	474
Psp6I	CCWGG	3 cut(s)	73, 121, 136
PspGI	CCWGG	3 cut(s)	73, 121, 136
PspLI	CGTACG	1 cut(s)	470
PspN4I	GGNNCC	2 cut(s)	238, 247
PspPI	GGNCC	2 cut(s)	561, 582
PsuI	RGATCY	1 cut(s)	393
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	35, 402
Sau3AI	GATC	2 cut(s)	393, 463
Sau96I	GGNCC	2 cut(s)	561, 582
SchI	GAGTC	2 cut(s)	97, 304
ScrFI	CCNGG	3 cut(s)	75, 123, 138
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	6 cut(s)	33, 62, 227, 287, 371, 476
SfaNI	GCATC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	12, 230, 572
SseBI	AGGCCT	2 cut(s)	126, 263
SsiI	CCGC	6 cut(s)	146, 377, 401, 439, 497, 513
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	2 cut(s)	38, 488
StuI	AGGCCT	2 cut(s)	126, 263
StyD4I	CCNGG	3 cut(s)	73, 121, 136
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	12, 230, 572
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	23, 567
TspGWI	ACGGA	1 cut(s)	551
Van91I	CCANNNNNTGG	1 cut(s)	441
XapI	RAATTY	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	2 cut(s)	38, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.