AT5G42895

Prolamin-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
17196762 .. 17197163
402 bp
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UTR
Exon/CDS
Intron
AT5G42895.1

Sequence Viewer

Length: 369 bp
ATGTCTATCAAAAATGTGCTTTCACTTCTTGCGGTTTTATGCATCATTGTTTCTGTAAATGCTCAATTGCCACAGATTCCTGGTCCGTTTCCTTTTCCATTTCCGTTCCAACCGATTCCTGGTATGCCAGGATTACTTGACATAACAAAATGTTTGTCATCCGTGATGGATATTCCCAGATGCATTACAGAAATTTCTCAATCTATTTTCATTGGAAAATTCGGTAATTTAGGTCCGGCTTGTTGCAAAGCATTTTTGGATGCTGAAGCCAATTGTATGCCCAAAATTCCATTCATTCCGCTTTTTCCTCCAATGCTAAAGGAACAATGTTCAAGAATTGCTGGTGCAACTCCTCCGACACCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.11

Weight (kDa)

8.54

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 50 - 111 5.8e-10 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 32, 299
AcsI RAATTY 3 cut(s) 192, 218, 285
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 333
AjnI CCWGG 3 cut(s) 79, 118, 127
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
ApoI RAATTY 3 cut(s) 192, 218, 285
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AspS9I GGNCC 2 cut(s) 83, 233
AvaII GGWCC 2 cut(s) 83, 233
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 3 cut(s) 81, 120, 129
Bme1390I CCNGG 3 cut(s) 81, 120, 129
Bme18I GGWCC 2 cut(s) 83, 233
BmgT120I GGNCC 2 cut(s) 83, 233
BmrFI CCNGG 3 cut(s) 81, 120, 129
BmsI GCATC 3 cut(s) 51, 170, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseBI CCWGG 3 cut(s) 81, 120, 129
BseGI GGATG 2 cut(s) 158, 265
BseLI CCNNNNNNNGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 119
BspACI CCGC 2 cut(s) 32, 299
Bst2UI CCWGG 3 cut(s) 81, 120, 129
BstF5I GGATG 2 cut(s) 158, 265
BstNI CCWGG 3 cut(s) 81, 120, 129
BstSCI CCNGG 3 cut(s) 79, 118, 127
BtsCI GGATG 2 cut(s) 158, 265
Cfr13I GGNCC 2 cut(s) 83, 233
CviJI RGCY 2 cut(s) 239, 269
CviKI_1 RGCY 2 cut(s) 239, 269
Eco47I GGWCC 2 cut(s) 83, 233
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 3 cut(s) 79, 118, 127
EcoT22I ATGCAT 2 cut(s) 44, 185
FaiI YATR 4 cut(s) 40, 125, 143, 278
FokI GGATG 2 cut(s) 145, 272
HapII CCGG 1 cut(s) 236
HinfI GANTC 2 cut(s) 76, 115
HpaII CCGG 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 42, 183, 246, 347
LpnPI CCDG 9 cut(s) 66, 93, 105, 114, 132, 141, 190, 249, 327
LweI GCATC 3 cut(s) 51, 170, 250
MfeI CAATTG 2 cut(s) 65, 271
MluCI AATT 7 cut(s) 65, 192, 218, 226, 271, 285, 336
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 2 cut(s) 318, 363
Mph1103I ATGCAT 2 cut(s) 44, 185
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 3 cut(s) 81, 120, 129
MunI CAATTG 2 cut(s) 65, 271
MvaI CCWGG 3 cut(s) 81, 120, 129
NsiI ATGCAT 2 cut(s) 44, 185
PfeI GAWTC 2 cut(s) 76, 115
Psp6I CCWGG 3 cut(s) 79, 118, 127
PspGI CCWGG 3 cut(s) 79, 118, 127
PspPI GGNCC 2 cut(s) 83, 233
Sau96I GGNCC 2 cut(s) 83, 233
ScrFI CCNGG 3 cut(s) 81, 120, 129
SetI ASST 1 cut(s) 235
SfaNI GCATC 3 cut(s) 51, 170, 250
SinI GGWCC 2 cut(s) 83, 233
Sse9I AATT 7 cut(s) 65, 192, 218, 226, 271, 285, 336
SsiI CCGC 2 cut(s) 32, 299
StyD4I CCNGG 3 cut(s) 79, 118, 127
TasI AATT 7 cut(s) 65, 192, 218, 226, 271, 285, 336
TfiI GAWTC 2 cut(s) 76, 115
TspDTI ATGAA 2 cut(s) 199, 283
TspGWI ACGGA 3 cut(s) 75, 93, 151
VpaK11BI GGWCC 2 cut(s) 83, 233
XapI RAATTY 3 cut(s) 192, 218, 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
Zsp2I ATGCAT 2 cut(s) 44, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.