Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Forward (+)

5299148 .. 5299711

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCATAAGAAATGGACATATAAAGTGTCATTACTCACCGCCTTGCTAGCTCAATCGACTGAATCGAGGATAGCGAATGCGCAGTTGCCGCCTATTGCTCCTTCCATTCCAGGGGGCCTATTTCCACCGGGCACTTTGCCGGATGTGCTCAAGTGTTGGTCATCTCTTACCGGCGTCACTAGATGTGTTAGGGAAATATTTCAATCCATTTTCAGCTTGCAATTCGGCAGCATTAGTGCCGACTGTTGCAAGGCCTTCCTTATTGTCGAGGACAGCTGCTTGCGAAAAATGTTTCCTCCGACTCCTTTCTTCCCTCCCTTGCTCAATAACATTTGTGCTCTCCAAGGAGCTCCTGCACCCCCAGCAAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

125

Amino Acids

13.47

Weight (kDa)

9.08

Isoelectric Point (pI)

72.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	51 - 112	1e-13	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	81
AciI	CCGC	2 cut(s)	39, 89
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	4 cut(s)	50, 216, 276, 350
AluI	AGCT	4 cut(s)	50, 216, 276, 350
Alw21I	GWGCWC	3 cut(s)	150, 340, 352
AoxI	GGCC	2 cut(s)	115, 252
ApeKI	GCWGC	2 cut(s)	228, 276
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	352
Bbv12I	GWGCWC	3 cut(s)	150, 340, 352
BbvI	GCAGC	2 cut(s)	240, 263
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	129
BfaI	CTAG	3 cut(s)	47, 180, 373
BisI	GCNGC	3 cut(s)	89, 229, 277
BlsI	GCNGC	3 cut(s)	90, 230, 278
Bme1390I	CCNGG	2 cut(s)	111, 129
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	111, 129
BmtI	GCTAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	110, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	110, 343
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	240, 263
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	117, 254
BsiHKAI	GWGCWC	3 cut(s)	150, 340, 352
BsiSI	CCGG	3 cut(s)	128, 140, 171
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	117, 254
Bsp1286I	GDGCHC	4 cut(s)	134, 150, 340, 352
BspACI	CCGC	2 cut(s)	39, 89
BspANI	GGCC	2 cut(s)	117, 254
BspLI	GGNNCC	1 cut(s)	116
BspOI	GCTAGC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	110, 343
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	48, 218, 281
BstF5I	GGATG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 88, 145, 362
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	109, 127
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	240, 263
BsuRI	GGCC	2 cut(s)	117, 254
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	3 cut(s)	48, 218, 281
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	163
CviJI	RGCY	6 cut(s)	50, 117, 216, 254, 276, 350
CviKI_1	RGCY	6 cut(s)	50, 117, 216, 254, 276, 350
Ecl136II	GAGCTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	343
Eco147I	AGGCCT	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	343
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	343
FaiI	YATR	3 cut(s)	6, 19, 21
Fnu4HI	GCNGC	3 cut(s)	89, 229, 277
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	3 cut(s)	89, 229, 277
FspBI	CTAG	3 cut(s)	47, 180, 373
FspI	TGCGCA	1 cut(s)	81
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	89, 229, 277
GsaI	CCCAGC	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	117, 254
HapII	CCGG	3 cut(s)	128, 140, 171
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	3 cut(s)	62, 301, 369
HpaII	CCGG	3 cut(s)	128, 140, 171
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	111, 265
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	4, 220, 249, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 88, 145, 362
Hsp92I	GRCGYC	1 cut(s)	174
HspAI	GCGC	1 cut(s)	80
LmnI	GCTCC	3 cut(s)	103, 347, 355
LpnPI	CCDG	6 cut(s)	96, 123, 141, 153, 184, 366
Lsp1109I	GCAGC	2 cut(s)	240, 263
MaeI	CTAG	3 cut(s)	47, 180, 373
MaeIII	GTNAC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	301
MhlI	GDGCHC	4 cut(s)	134, 150, 340, 352
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	60, 262, 306, 324
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	3 cut(s)	128, 140, 171
MspR9I	CCNGG	2 cut(s)	111, 129
Mva1269I	GAATGC	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	47, 88, 145, 362
NciI	CCSGG	1 cut(s)	129
NheI	GCTAGC	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	175
NsbI	TGCGCA	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	2 cut(s)	62, 71
PctI	GAATGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	62, 369
PkrI	GCNGC	3 cut(s)	90, 230, 278
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	352
SatI	GCNGC	3 cut(s)	89, 229, 277
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	111, 129
SduI	GDGCHC	4 cut(s)	134, 150, 340, 352
SetI	ASST	4 cut(s)	52, 218, 278, 352
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	221
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	39, 89
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	3 cut(s)	47, 180, 373
SstI	GAGCTC	1 cut(s)	352
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	109, 127
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	3 cut(s)	56, 65, 267
TasI	AATT	1 cut(s)	221
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	62, 369
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	228, 276
Tsp45I	GTSAC	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	3 cut(s)	47, 180, 373
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.