Prupe.5G124700_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000547
Physical Location & Seq
Reverse (-)
12266722 .. 12267219
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G124700.1

Sequence Viewer

Length: 498 bp
ATGAGGATTTCAATCTCCATTGTGTTGCTTTTTGTGAGCTCAGCATTGTTGTTCAATGTAGGGTTTGGGAGGCATAACCCTCCCTATGTCACCCAATTCCTTCATGATCGTGCTGCACATGCACATCCAAAGACAGTCTCACATGCGGCACATCCAAAGGCAGTCTCACGGCTTTGGTTCTACTTTGGGCAGCCTTTGACGCCACCGCCACCACAAGTTCCGGCACTGCCGACATGGAAACCACCAACTCAAGAAGATTATGAAAAATGTTGGTCATCACTAACTGACATAGACAGATTAGTGGGAGACCTGATGTCTGCCTTTTTTACTGGCGATTATAGTCGCATTGGACCAGATTGTTGCGCTGCCATCGATGGAATTGATCAGAATTGTTTTGGCTTGATGTTAGACCAGTTCAACAATAGATATTATGTTCCTGCCGTCAGACAAAGTTGCGCTGATCAACACTCTCCACCCAAGGCGCCTTCCAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

166

Amino Acids

18.4

Weight (kDa)

7.7

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AciI CCGC 2 cut(s) 146, 206
AcyI GRCGYC 2 cut(s) 200, 482
AgsI TTSAA 3 cut(s) 12, 55, 418
AhdI GACNNNNNGTC 1 cut(s) 313
AluBI AGCT 2 cut(s) 39, 494
AluI AGCT 2 cut(s) 39, 494
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 3 cut(s) 142, 169, 300
ApeKI GCWGC 3 cut(s) 113, 190, 365
AspLEI GCGC 3 cut(s) 365, 458, 484
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 100, 202, 352
BccI CCATC 2 cut(s) 368, 377
BceAI ACGGC 2 cut(s) 185, 425
BclI TGATCA 2 cut(s) 382, 460
BcoDI GTCTC 3 cut(s) 142, 169, 300
BfoI RGCGCY 1 cut(s) 485
BisI GCNGC 4 cut(s) 114, 147, 191, 366
BlpI GCTNAGC 1 cut(s) 40
BlsI GCNGC 4 cut(s) 115, 148, 192, 367
Bme18I GGWCC 1 cut(s) 350
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 483
Bpu1102I GCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 234
Bsa29I ATCGAT 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 2 cut(s) 200, 482
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 477
Bse1I ACTGG 2 cut(s) 334, 412
Bse8I GATNNNNATC 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 2 cut(s) 124, 151
BseJI GATNNNNATC 1 cut(s) 11
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 2 cut(s) 334, 412
BseXI GCAGC 3 cut(s) 100, 202, 352
BsgI GTGCAG 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 481
BshVI ATCGAT 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 221
BsmAI GTCTC 3 cut(s) 142, 169, 300
Bso31I GGTCTC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 106, 382, 460
Bsp1720I GCTNAGC 1 cut(s) 40
BspACI CCGC 2 cut(s) 146, 206
BspCNI CTCAG 1 cut(s) 53
BspDI ATCGAT 1 cut(s) 372
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 300
BsrI ACTGG 2 cut(s) 334, 412
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 3 cut(s) 106, 382, 460
BssNI GRCGYC 2 cut(s) 200, 482
BssT1I CCWWGG 1 cut(s) 477
Bst4CI ACNGT 1 cut(s) 136
BstACI GRCGYC 2 cut(s) 200, 482
BstDEI CTNAG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 124, 151
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 3 cut(s) 365, 458, 484
BstKTI GATC 3 cut(s) 109, 385, 463
BstMAI GTCTC 3 cut(s) 142, 169, 300
BstMBI GATC 3 cut(s) 106, 382, 460
BstMWI GCNNNNNNNGC 2 cut(s) 119, 199
BstNSI RCATGY 2 cut(s) 122, 146
BstV1I GCAGC 3 cut(s) 100, 202, 352
Bsu15I ATCGAT 1 cut(s) 372
BsuTUI ATCGAT 1 cut(s) 372
BtsCI GGATG 2 cut(s) 124, 151
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
CciI TCATGA 1 cut(s) 103
CfoI GCGC 3 cut(s) 365, 458, 484
Cfr13I GGNCC 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 372
CseI GACGC 1 cut(s) 208
CviAII CATG 4 cut(s) 104, 119, 143, 234
CviJI RGCY 5 cut(s) 39, 172, 193, 399, 494
CviKI_1 RGCY 5 cut(s) 39, 172, 193, 399, 494
DdeI CTNAG 1 cut(s) 40
DinI GGCGCC 1 cut(s) 483
DpnI GATC 3 cut(s) 108, 384, 462
DpnII GATC 3 cut(s) 106, 382, 460
DriI GACNNNNNGTC 1 cut(s) 313
Eam1105I GACNNNNNGTC 1 cut(s) 313
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 350
Eco53kI GAGCTC 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 483
EheI GGCGCC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 4 cut(s) 107, 122, 146, 237
FatI CATG 4 cut(s) 103, 118, 142, 233
FbaI TGATCA 2 cut(s) 382, 460
Fnu4HI GCNGC 4 cut(s) 114, 147, 191, 366
FokI GGATG 2 cut(s) 111, 138
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 4 cut(s) 114, 147, 191, 366
GlaI GCGC 3 cut(s) 364, 457, 483
GluI GCNGC 4 cut(s) 114, 147, 191, 366
HaeII RGCGCY 1 cut(s) 485
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 208
HhaI GCGC 3 cut(s) 365, 458, 484
Hin1I GRCGYC 2 cut(s) 200, 482
Hin1II CATG 4 cut(s) 107, 122, 146, 237
Hin6I GCGC 3 cut(s) 363, 456, 482
HinP1I GCGC 3 cut(s) 363, 456, 482
HindIII AAGCTT 1 cut(s) 492
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 387, 446
Hpy188III TCNNGA 2 cut(s) 104, 251
HpyAV CCTTC 2 cut(s) 110, 495
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 116, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 199
HpyF3I CTNAG 1 cut(s) 40
Hsp92I GRCGYC 2 cut(s) 200, 482
Hsp92II CATG 4 cut(s) 107, 122, 146, 237
HspAI GCGC 3 cut(s) 363, 456, 482
KasI GGCGCC 1 cut(s) 481
Ksp22I TGATCA 2 cut(s) 382, 460
Kzo9I GATC 3 cut(s) 106, 382, 460
LpnPI CCDG 6 cut(s) 234, 315, 323, 366, 425, 450
Lsp1109I GCAGC 3 cut(s) 100, 202, 352
MaeIII GTNAC 1 cut(s) 88
MalI GATC 3 cut(s) 108, 384, 462
MboI GATC 3 cut(s) 106, 382, 460
MboII GAAGA 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 3 cut(s) 95, 378, 388
Mly113I GGCGCC 1 cut(s) 482
MnlI CCTC 2 cut(s) 63, 90
MseI TTAA 1 cut(s) 496
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 119, 199
NarI GGCGCC 1 cut(s) 482
NdeII GATC 3 cut(s) 106, 382, 460
NlaIII CATG 4 cut(s) 107, 122, 146, 237
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 2 cut(s) 122, 146
PagI TCATGA 1 cut(s) 103
PkrI GCNGC 4 cut(s) 115, 148, 192, 367
PluTI GGCGCC 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 108
SacI GAGCTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 4 cut(s) 114, 147, 191, 366
Sau3AI GATC 3 cut(s) 106, 382, 460
Sau96I GGNCC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 41
SetI ASST 3 cut(s) 41, 312, 496
SfoI GGCGCC 1 cut(s) 483
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
Sse9I AATT 3 cut(s) 95, 378, 388
SsiI CCGC 2 cut(s) 146, 206
SspDI GGCGCC 1 cut(s) 481
SstI GAGCTC 1 cut(s) 41
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 372
TasI AATT 3 cut(s) 95, 378, 388
TauI GCSGC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 3 cut(s) 113, 190, 365
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 92, 276
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 350
XceI RCATGY 2 cut(s) 122, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.