Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Forward (+)

19548414 .. 19549141

Gene Structure 728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTGGAGCAACAAGTTCTTCTTCCTTCTTCCAGTTGTATGCATCGTAGTGTTCGCTACTTCTCAACCATTGCCATCACCACAACCTTCCCAACTAGATTGTTGGTCATCACTAGAAGTTATTCCCGACTGTGTCCCGGAAATTTTCCGATCGATAACAAATGGACAGTTCGGGAATGTAGGTCCTTCTTGCTGCCATGCTTTTATAGGTCTCGATACTGAATGCATCCCTCAGATGTTTATCTTCGCTCCCCTCATCCCGCCTTCTCGCAGACTCAGGGATCATTGTTCCCACAAAATAATTGTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

103

Amino Acids

11.53

Weight (kDa)

6.23

Isoelectric Point (pI)

72.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	33 - 97	2.7e-15	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	95, 113
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	51, 234
BpuMI	CCSGG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	152
BseGI	GGATG	2 cut(s)	225, 255
BseJI	GATNNNNATC	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	245, 289
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	149, 280
BspACI	CCGC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	244, 288
BspDI	ATCGAT	1 cut(s)	152
BspPI	GGATC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	149, 280
Bst4CI	ACNGT	2 cut(s)	131, 168
BstDEI	CTNAG	2 cut(s)	231, 275
BstF5I	GGATG	2 cut(s)	225, 255
BstKTI	GATC	2 cut(s)	152, 283
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	149, 280
BstMCI	CGRYCG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	179
Bsu15I	ATCGAT	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	225, 255
Cfr13I	GGNCC	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	152
CviAII	CATG	1 cut(s)	197
DdeI	CTNAG	2 cut(s)	231, 275
DpnI	GATC	2 cut(s)	151, 282
DpnII	GATC	2 cut(s)	149, 280
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	182
EcoT22I	ATGCAT	2 cut(s)	44, 227
FaeI	CATG	1 cut(s)	200
FaiI	YATR	4 cut(s)	40, 198, 206, 310
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	1 cut(s)	196
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	193
FokI	GGATG	2 cut(s)	212, 242
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	2 cut(s)	95, 113
GluI	GCNGC	1 cut(s)	193
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	1 cut(s)	200
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	149, 234
Hpy188III	TCNNGA	3 cut(s)	125, 172, 212
HpyAV	CCTTC	4 cut(s)	35, 96, 195, 273
HpyCH4III	ACNGT	2 cut(s)	131, 168
HpyCH4V	TGCA	2 cut(s)	42, 225
HpyF3I	CTNAG	2 cut(s)	231, 275
Hsp92II	CATG	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	149, 280
LmnI	GCTCC	2 cut(s)	6, 253
LpnPI	CCDG	3 cut(s)	45, 150, 262
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	2 cut(s)	51, 234
MaeI	CTAG	2 cut(s)	95, 113
MalI	GATC	2 cut(s)	151, 282
MboI	GATC	2 cut(s)	149, 280
MboII	GAAGA	4 cut(s)	10, 13, 20, 235
MluCI	AATT	2 cut(s)	141, 300
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	2 cut(s)	240, 263
Mph1103I	ATGCAT	2 cut(s)	44, 227
MroXI	GAANNNNTTC	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	149, 280
NlaIII	CATG	1 cut(s)	200
NsiI	ATGCAT	2 cut(s)	44, 227
PctI	GAATGC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	120
PflFI	GACNNNGTC	1 cut(s)	131
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	194
Ple19I	CGATCG	1 cut(s)	152
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	182
PspPPI	RGGWCCY	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	131
PvuI	CGATCG	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	47
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	2 cut(s)	149, 280
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	3 cut(s)	88, 184, 211
SfaNI	GCATC	2 cut(s)	51, 234
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	141, 300
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	2 cut(s)	95, 113
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	131, 168
TaqI	TCGA	2 cut(s)	152, 213
TasI	AATT	2 cut(s)	141, 300
TseI	GCWGC	1 cut(s)	192
Tth111I	GACNNNGTC	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	95, 113
Zsp2I	ATGCAT	2 cut(s)	44, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.