Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000547

Physical Location & Seq

Genomic Coordinates Forward (+)

1108315 .. 1108677

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAATGAAAAGGGAAGCATTGTCTTCGTTGCTGCTAGTGACATTACTGACCGCCTTGCTAGCTCAATCGAGGATAACAAATGCGCAGTTGCTACCGAGTCCTCCTTCCGTTCCAGGGAGCCTATTTCCACCAGGAACTGCGCCGGATGTGCTCAAGTGTTGGTCATCTCTTACCGGCGTCAGCGGATGTGTTACAGAAATCTTTCAATCCGTTTTCACCCTGCAATTCGGCAGGATTAGTGCCAATTGTTGTAAGGCCTTCCTTGCTGTTGAGGACAGCTGTTTGCCCAAAATGTTTCCTCTCACTCCGTTCTTCCCTCCTTTGCTCAAGAACATTTGTGCTCTCCCAGCAAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

121

Amino Acids

12.84

Weight (kDa)

8.9

Isoelectric Point (pI)

67.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	53 - 114	4.8e-15	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24205 AT3G42565 AT4G09545 AT5G36310 AT5G36320 AT5G36330 AT5G36340 AT5G36350 AT5G36360 AT5G36370 AT5G36380 AT5G36390 AT5G36400 AT5G36410 AT5G36420 AT5G36430 AT5G36440 AT5G36450 AT5G36460 AT5G36470 AT5G36480 AT5G36490 AT5G36500 AT5G36520 AT5G36540 AT5G36550 AT5G36657 AT5G36658 AT5G36659 AT5G36661 AT5G36662 AT5G36738 AT5G36739 AT5G42895 AT5G44495 AT5G48210 AT5G51105 AT5G60945 AT5G60964
fragaria_vesca	FvH4_1g02090 FvH4_1g09740 FvH4_4g12560
prunus_persica	Prupe.5G124700_v2.0.a1 Prupe.5G124800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087131 RchiOBHm_Chr2g0087141 RchiOBHm_Chr2g0131141 RchiOBHm_Chr2g0131221 RchiOBHm_Chr2g0131241
rosa_laevigata	RLG00000015835 RLG00000015836
rosa_multiflora	Rmu_co8017302.1_g000001 Rmu_sc0003367.1_g000003 Rmu_sc0003367.1_g000004 Rmu_sc0008742.1_g000002 Rmu_ssc0000019.1_g000023 Rmu_ssc0000239.1_g000005 Rmu_ssc0000239.1_g000006
rosa_rugosa	Rorug01G0472700 Rorug01G0472800 Rorug02G0295500
rosa_samantha	Rh2AG025900 Rh2AG026000 Rh2AG347800 Rh2AG348700 Rh2AG348900 Rh2BG025800 Rh2BG025900 Rh2BG356000 Rh2BG356100 Rh2CG026200 Rh2CG026300 Rh2CG334600 Rh2CG334800 Rh2CG334900 Rh2DG026200 Rh2DG026300 Rh2DG373900 Rh2DG374000
rosa_wichuraiana	Rw2G002070 Rw2G002080 Rw2G028270 Rw2G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	87
AciI	CCGC	2 cut(s)	54, 186
AcyI	GRCGYC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	2 cut(s)	115, 133
AluBI	AGCT	2 cut(s)	65, 282
AluI	AGCT	2 cut(s)	65, 282
Alw21I	GWGCWC	2 cut(s)	156, 346
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	2 cut(s)	88, 145
AsuHPI	GGTGA	1 cut(s)	211
AsuNHI	GCTAGC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	156, 346
BbvI	GCAGC	1 cut(s)	21
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	2 cut(s)	117, 135
BfaI	CTAG	3 cut(s)	38, 62, 361
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	117, 135
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	2 cut(s)	117, 135
BmtI	GCTAGC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	18
BpuEI	CTTGAG	2 cut(s)	140, 314
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	117, 135
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	154, 194
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	156, 346
BsiSI	CCGG	2 cut(s)	146, 177
BslI	CCNNNNNNNGG	1 cut(s)	117
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	156, 346
BspACI	CCGC	2 cut(s)	54, 186
BspANI	GGCC	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	116
BssNI	GRCGYC	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	117, 135
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	154, 194
BstHHI	GCGC	2 cut(s)	88, 145
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 151, 266, 350
BstNI	CCWGG	2 cut(s)	117, 135
BstSCI	CCNGG	2 cut(s)	115, 133
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	154, 194
Cac8I	GCNNGC	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	140
CfoI	GCGC	2 cut(s)	88, 145
Cfr10I	RCCGGY	1 cut(s)	176
CseI	GACGC	1 cut(s)	169
CviJI	RGCY	4 cut(s)	65, 123, 260, 282
CviKI_1	RGCY	4 cut(s)	65, 123, 260, 282
Eco147I	AGGCCT	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	115, 133
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	161, 201
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	3 cut(s)	38, 62, 361
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	2 cut(s)	87, 144
GluI	GCNGC	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	2 cut(s)	146, 177
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	88, 145
Hin1I	GRCGYC	1 cut(s)	180
Hin6I	GCGC	2 cut(s)	86, 143
HinP1I	GCGC	2 cut(s)	86, 143
HinfI	GANTC	2 cut(s)	100, 357
HpaII	CCGG	2 cut(s)	146, 177
HphI	GGTGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	117, 271
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 151, 266, 350
Hsp92I	GRCGYC	1 cut(s)	180
HspAI	GCGC	2 cut(s)	86, 143
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	8 cut(s)	102, 120, 129, 147, 159, 190, 220, 236
Lsp1109I	GCAGC	1 cut(s)	21
MaeI	CTAG	3 cut(s)	38, 62, 361
MaeIII	GTNAC	2 cut(s)	40, 193
MboII	GAAGA	2 cut(s)	18, 307
MfeI	CAATTG	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	156, 346
MluCI	AATT	2 cut(s)	227, 247
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	5 cut(s)	66, 114, 268, 312, 330
MroXI	GAANNNNTTC	1 cut(s)	204
MspA1I	CMGCKG	2 cut(s)	186, 282
MspI	CCGG	2 cut(s)	146, 177
MspR9I	CCNGG	2 cut(s)	117, 135
MunI	CAATTG	1 cut(s)	247
MvaI	CCWGG	2 cut(s)	117, 135
MwoI	GCNNNNNNNGC	4 cut(s)	62, 151, 266, 350
NheI	GCTAGC	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	40
NsbI	TGCGCA	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	115, 133
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	2 cut(s)	115, 133
PspN4I	GGNNCC	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	282
SatI	GCNGC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	117, 135
SduI	GDGCHC	2 cut(s)	156, 346
SetI	ASST	2 cut(s)	67, 284
SmlI	CTYRAG	2 cut(s)	155, 329
SmoI	CTYRAG	2 cut(s)	155, 329
Sse9I	AATT	2 cut(s)	227, 247
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	54, 186
SspMI	CTAG	3 cut(s)	38, 62, 361
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	115, 133
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	227, 247
TfiI	GAWTC	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	3 cut(s)	100, 202, 300
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	3 cut(s)	38, 62, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.