AT4G09545

Egg cell-secreted protein 1.1-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
6037565 .. 6037937
373 bp
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UTR
Exon/CDS
Intron
AT4G09545.1

Sequence Viewer

Length: 369 bp
ATGCCTATCAAAAATGTGTTTTCACTCTTAGTGGTTCTATGCATCATAGTTTCTGTAAATGCTCAGTTACCTCAGTTTCCGGCTCCGTTTCTTTTTCCATTTTCGTTTCAACCGATTCCTGGAATGCCAGGATTACCTGATATAACGAAATGTTGGTCATCCGTGATGGATATTCCTGAATGCATTGCAGAGATTTCTCAATCCATTTTTATTGGCAAATTCAGTAATTTAGGTTCTGCTTGTTGCAAAGCATTTTTGGACGCTGAAGCCAACTGCATACCAAAAATTCCACTTATTCCGCTTTTCCCTCCGATGCTAAAAGAACAATGTTCAAGAATTGCCGGTGTAACTCCTCCTACACCGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.23

Weight (kDa)

7.51

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 50 - 111 5.9e-11 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 299
AcsI RAATTY 2 cut(s) 218, 285
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 110, 333
AjnI CCWGG 2 cut(s) 118, 127
ApoI RAATTY 2 cut(s) 218, 285
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 120, 129
Bme1390I CCNGG 2 cut(s) 120, 129
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 2 cut(s) 120, 129
BmsI GCATC 2 cut(s) 51, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 120, 129
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 77, 86
BseRI GAGGAG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 80, 342
BslI CCNNNNNNNGG 1 cut(s) 119
BsmI GAATGC 2 cut(s) 129, 185
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 76, 85
BspLI GGNNCC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 120, 129
BstDEI CTNAG 3 cut(s) 28, 63, 72
BstF5I GGATG 1 cut(s) 158
BstNI CCWGG 2 cut(s) 120, 129
BstSCI CCNGG 2 cut(s) 118, 127
BtsCI GGATG 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 341
CseI GACGC 1 cut(s) 269
CviJI RGCY 2 cut(s) 83, 269
CviKI_1 RGCY 2 cut(s) 83, 269
DdeI CTNAG 3 cut(s) 28, 63, 72
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 118, 127
EcoT22I ATGCAT 2 cut(s) 44, 185
FaiI YATR 4 cut(s) 40, 47, 143, 278
FokI GGATG 1 cut(s) 145
HapII CCGG 2 cut(s) 80, 342
HgaI GACGC 1 cut(s) 269
HinfI GANTC 1 cut(s) 115
HpaII CCGG 2 cut(s) 80, 342
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 176, 333
HpyCH4V TGCA 5 cut(s) 42, 183, 188, 246, 276
HpyF3I CTNAG 3 cut(s) 28, 63, 72
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 93, 105, 114, 132, 141, 150, 189, 355
LweI GCATC 2 cut(s) 51, 303
MaeIII GTNAC 2 cut(s) 66, 346
MluCI AATT 4 cut(s) 218, 226, 285, 336
MnlI CCTC 3 cut(s) 81, 318, 363
Mph1103I ATGCAT 2 cut(s) 44, 185
MspI CCGG 2 cut(s) 80, 342
MspR9I CCNGG 2 cut(s) 120, 129
Mva1269I GAATGC 2 cut(s) 129, 185
MvaI CCWGG 2 cut(s) 120, 129
NlaIV GGNNCC 1 cut(s) 84
NsiI ATGCAT 2 cut(s) 44, 185
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 2 cut(s) 129, 185
PfeI GAWTC 1 cut(s) 115
PfoI TCCNGGA 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 118, 127
PspGI CCWGG 2 cut(s) 118, 127
PspN4I GGNNCC 1 cut(s) 84
PsrI GAACNNNNNNTAC 2 cut(s) 217, 249
ScrFI CCNGG 2 cut(s) 120, 129
SetI ASST 3 cut(s) 73, 139, 235
SfaNI GCATC 2 cut(s) 51, 303
Sse9I AATT 4 cut(s) 218, 226, 285, 336
SsiI CCGC 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 118, 127
TasI AATT 4 cut(s) 218, 226, 285, 336
TfiI GAWTC 1 cut(s) 115
TspGWI ACGGA 2 cut(s) 75, 151
XapI RAATTY 2 cut(s) 218, 285
Zsp2I ATGCAT 2 cut(s) 44, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.