Rh2DG374000

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000547
Physical Location & Seq
Reverse (-)
53191070 .. 53191432
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG374000.1

Sequence Viewer

Length: 363 bp
ATGTCAAGGAACATTGAAGCATTGTTTTCAGTGCTACTAGTGGCACTATGCACTACTGTCTTGCTGACCAATGCGCAGTTTCTACCACCCAATGCTCCTTCGATTCCAGGCCTGTTTCCACCAGGAATGCCGCCGGATGCACTAAAGTGTTGGTCATCCCTAACCAACATTAGTGGATGTGCTTTGGAAGTCTTTCGCTCTATTTTCAGCTTGCAATTTGGAAACATTGGTCCCAACTGTTGCAAGGCCTTTCTTGGTTTGGAGGAAAGCTGTTGGCCTAGAATGTTTCCTTCGAATCCTTCCTTTCCTCCCTTGCTCAACAACAGCTGTTCTCACAGAGGAGGTTTTGTGCCACCGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

120

Amino Acids

12.9

Weight (kDa)

7.55

Isoelectric Point (pI)

76.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 49 - 111 6.6e-16 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 75
AciI CCGC 1 cut(s) 131
AgsI TTSAA 1 cut(s) 17
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 2 cut(s) 106, 121
AleI CACNNNNGTG 1 cut(s) 145
AluBI AGCT 3 cut(s) 210, 270, 327
AluI AGCT 3 cut(s) 210, 270, 327
AoxI GGCC 3 cut(s) 109, 246, 275
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 230
BciT130I CCWGG 2 cut(s) 108, 123
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 38, 279
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 2 cut(s) 108, 123
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 108, 123
BmsI GCATC 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bse118I RCCGGY 1 cut(s) 355
BseBI CCWGG 2 cut(s) 108, 123
BseGI GGATG 3 cut(s) 142, 155, 182
BseRI GAGGAG 1 cut(s) 354
BshFI GGCC 3 cut(s) 111, 248, 277
BsiSI CCGG 2 cut(s) 134, 356
BslFI GGGAC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 3 cut(s) 111, 248, 277
Bsp119I TTCGAA 1 cut(s) 293
BspACI CCGC 1 cut(s) 131
BspANI GGCC 3 cut(s) 111, 248, 277
BspLI GGNNCC 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 355
Bst2UI CCWGG 2 cut(s) 108, 123
Bst4CI ACNGT 2 cut(s) 58, 239
BstBI TTCGAA 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 212
BstF5I GGATG 3 cut(s) 142, 155, 182
BstHHI GCGC 1 cut(s) 76
BstNI CCWGG 2 cut(s) 108, 123
BstSCI CCNGG 2 cut(s) 106, 121
BsuRI GGCC 3 cut(s) 111, 248, 277
BtsCI GGATG 3 cut(s) 142, 155, 182
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 1 cut(s) 360
CviJI RGCY 6 cut(s) 111, 210, 248, 270, 277, 327
CviKI_1 RGCY 6 cut(s) 111, 210, 248, 270, 277, 327
Eco147I AGGCCT 2 cut(s) 111, 248
Eco47I GGWCC 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 106, 121
FaeI CATG 1 cut(s) 363
FaiI YATR 2 cut(s) 49, 361
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 3 cut(s) 142, 149, 189
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 2 cut(s) 38, 279
FspI TGCGCA 1 cut(s) 75
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 131
HaeIII GGCC 3 cut(s) 111, 248, 277
HapII CCGG 2 cut(s) 134, 356
HhaI GCGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 363
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 2 cut(s) 103, 295
HpaII CCGG 2 cut(s) 134, 356
HpyAV CCTTC 3 cut(s) 108, 300, 309
HpyCH4III ACNGT 2 cut(s) 58, 239
HpyCH4V TGCA 4 cut(s) 51, 140, 214, 243
Hsp92II CATG 1 cut(s) 363
HspAI GCGC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 93, 108, 120, 125, 135, 147
LweI GCATC 1 cut(s) 127
MaeI CTAG 2 cut(s) 38, 279
MluCI AATT 1 cut(s) 215
MnlI CCTC 4 cut(s) 256, 318, 332, 335
MroXI GAANNNNTTC 1 cut(s) 192
MslI CAYNNNNRTG 2 cut(s) 145, 358
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 2 cut(s) 134, 356
MspR9I CCNGG 2 cut(s) 108, 123
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 2 cut(s) 108, 123
NlaIII CATG 1 cut(s) 363
NlaIV GGNNCC 1 cut(s) 232
NsbI TGCGCA 1 cut(s) 75
NspV TTCGAA 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 145
PceI AGGCCT 2 cut(s) 111, 248
PctI GAATGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 103, 295
PkrI GCNGC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 106, 121
PspGI CCWGG 2 cut(s) 106, 121
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 327
RseI CAYNNNNRTG 2 cut(s) 145, 358
SatI GCNGC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 108, 123
SetI ASST 4 cut(s) 212, 272, 329, 346
SfaNI GCATC 1 cut(s) 127
SfuI TTCGAA 1 cut(s) 293
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 2 cut(s) 145, 358
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 1 cut(s) 215
SseBI AGGCCT 2 cut(s) 111, 248
SsiI CCGC 1 cut(s) 131
SspMI CTAG 2 cut(s) 38, 279
StuI AGGCCT 2 cut(s) 111, 248
StyD4I CCNGG 2 cut(s) 106, 121
TaaI ACNGT 2 cut(s) 58, 239
TaqI TCGA 2 cut(s) 101, 293
TasI AATT 1 cut(s) 215
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 2 cut(s) 103, 295
TscAI CASTG 1 cut(s) 36
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 2 cut(s) 38, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.