AT3G42565

Egg cell-secreted protein 1.1-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
14683051 .. 14683410
360 bp
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UTR
Exon/CDS
Intron
AT3G42565.1

Sequence Viewer

Length: 360 bp
ATGTCTATCAAAAATGTGTTTTCCCTTCTATATGTTCTATGTATCATAGTTTCTGTAAATGCTCAATTGCCTCAGTTTCCAGCTCAACTTCCTTTTCCGTTTCCGTTCCAACTGATTTCTGGATTACCTGATATAACAAAATGTTGGTCATCCGTGATGGATATTCCTGGATGCATTGCAGAGATTTCTCAATCCATTTTCACTGGAAAGTTCGGTAATTTAGGTCCGGCTTGTTGCAAAGCATTTTTGGATGCCAAAGTTAATTGCATACCGAAAATTCCATTCATTCCGTTATTCCCTCCGATGCTAAAGGAACAATGTTCAAGAGTTGCCGGTGCAACTCCTCCCATACCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

12.93

Weight (kDa)

8.75

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 47 - 108 1.7e-11 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 276
AgsI TTSAA 1 cut(s) 324
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
ApoI RAATTY 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspS9I GGNCC 1 cut(s) 224
AvaII GGWCC 1 cut(s) 224
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 161, 241, 294
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 149, 176, 256
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 333
BsiSI CCGG 2 cut(s) 227, 333
BspCNI CTCAG 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 3 cut(s) 149, 176, 256
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BtsCI GGATG 3 cut(s) 149, 176, 256
BtsIMutI CAGTG 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 224
CviJI RGCY 2 cut(s) 83, 230
CviKI_1 RGCY 2 cut(s) 83, 230
DdeI CTNAG 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 176
FaiI YATR 7 cut(s) 31, 33, 40, 47, 134, 269, 350
FokI GGATG 3 cut(s) 136, 183, 263
HapII CCGG 2 cut(s) 227, 333
HpaII CCGG 2 cut(s) 227, 333
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 2 cut(s) 120, 324
HpyAV CCTTC 1 cut(s) 35
HpyCH4V TGCA 5 cut(s) 174, 179, 237, 267, 338
HpyF3I CTNAG 1 cut(s) 72
LpnPI CCDG 8 cut(s) 93, 105, 141, 153, 180, 189, 240, 346
LweI GCATC 3 cut(s) 161, 241, 294
MfeI CAATTG 1 cut(s) 65
MluCI AATT 4 cut(s) 65, 217, 262, 276
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 3 cut(s) 81, 309, 354
Mph1103I ATGCAT 1 cut(s) 176
MseI TTAA 1 cut(s) 261
MspI CCGG 2 cut(s) 227, 333
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 168
SetI ASST 3 cut(s) 85, 130, 226
SfaNI GCATC 3 cut(s) 161, 241, 294
SinI GGWCC 1 cut(s) 224
Sse9I AATT 4 cut(s) 65, 217, 262, 276
StyD4I CCNGG 1 cut(s) 166
TasI AATT 4 cut(s) 65, 217, 262, 276
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 274
TspGWI ACGGA 4 cut(s) 87, 93, 142, 279
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.