AT5G51105

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000547
Physical Location & Seq
Forward (+)
20777574 .. 20778118
545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51105.1

Sequence Viewer

Length: 372 bp
ATGTCGATCAAGAGTGTTGTTTCTCTCCTAGTAGTTGTATGCATCGCAGCCTCCGTTAATGCTCAGCTACCGCAGTTTCCCCCAATCATGTTCCCGTTTCCAAATCCGTTCAAACCAAGTCCCGGTATGGCAGGAAGTCCCGACTTGAGCAAATGTTGGTCAACAGTGATGGATTTGCCGGGATGCTTTGAAGAGATTCAACAAGCCGTAATGTCCGGCAAATTTGAAGGCGTTGGTCCTGCTTGTTGTAAAGCTTTCCTTGACGCTGAAGCTAACTGCTTACCAAATCTTCCATCCAACCCGTTTTTCCCTCCTATGATGAAACACCAATGCTCCAAAATGGCTAGTCCTCCAACCACCACCGCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

123

Amino Acids

13.14

Weight (kDa)

6.51

Isoelectric Point (pI)

66.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 51 - 112 1.2e-10 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 71, 363
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 4 cut(s) 112, 191, 200, 227
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 3 cut(s) 67, 254, 272
AluI AGCT 3 cut(s) 67, 254, 272
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 2 cut(s) 123, 180
AvaII GGWCC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 59
BccI CCATC 2 cut(s) 163, 301
BceAI ACGGC 1 cut(s) 191
BcnI CCSGG 2 cut(s) 123, 180
BfaI CTAG 2 cut(s) 29, 345
BisI GCNGC 1 cut(s) 48
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 123, 180
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmrFI CCNGG 2 cut(s) 123, 180
BmsI GCATC 2 cut(s) 51, 173
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 2 cut(s) 123, 180
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 122
BseGI GGATG 2 cut(s) 188, 293
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 59
BsiSI CCGG 3 cut(s) 123, 179, 216
BslFI GGGAC 2 cut(s) 105, 123
BslI CCNNNNNNNGG 1 cut(s) 122
BsmFI GGGAC 2 cut(s) 105, 123
Bsp143I GATC 1 cut(s) 6
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 2 cut(s) 71, 363
BspCNI CTCAG 1 cut(s) 76
BssMI GATC 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 188, 293
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstSCI CCNGG 2 cut(s) 121, 178
BstV1I GCAGC 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 2 cut(s) 188, 293
BtsIMutI CAGTG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 236
CseI GACGC 1 cut(s) 272
CviAII CATG 1 cut(s) 88
CviJI RGCY 6 cut(s) 50, 67, 206, 254, 272, 344
CviKI_1 RGCY 6 cut(s) 50, 67, 206, 254, 272, 344
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 44
FaeI CATG 1 cut(s) 91
FaiI YATR 4 cut(s) 40, 89, 128, 317
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 2 cut(s) 105, 123
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 195, 280
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 29, 345
GluI GCNGC 1 cut(s) 48
HapII CCGG 3 cut(s) 123, 179, 216
HgaI GACGC 1 cut(s) 272
Hin1II CATG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 1 cut(s) 196
HpaII CCGG 3 cut(s) 123, 179, 216
Hpy166II GTNNAC 1 cut(s) 162
Hpy188III TCNNGA 2 cut(s) 10, 140
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 5 cut(s) 117, 136, 192, 229, 252
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 2 cut(s) 51, 173
MaeI CTAG 2 cut(s) 29, 345
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 203, 281
MluCI AATT 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 3 cut(s) 61, 321, 360
Mph1103I ATGCAT 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 1 cut(s) 57
MspI CCGG 3 cut(s) 123, 179, 216
MspR9I CCNGG 2 cut(s) 123, 180
NciI CCSGG 2 cut(s) 123, 180
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 123, 180
SetI ASST 3 cut(s) 69, 256, 274
SfaNI GCATC 2 cut(s) 51, 173
SinI GGWCC 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 1 cut(s) 221
SsiI CCGC 2 cut(s) 71, 363
SspMI CTAG 2 cut(s) 29, 345
StyD4I CCNGG 2 cut(s) 121, 178
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 221
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 335
TspGWI ACGGA 2 cut(s) 43, 96
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 2 cut(s) 29, 345
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.