AT5G36340

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000547
Physical Location & Seq
Reverse (-)
14331286 .. 14331633
348 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36340.1

Sequence Viewer

Length: 348 bp
ATGTCTATCAAAAATGTGTTTTCACTTCTAGCGGTTCTATGTATCATAGTTTCTGTAAATGCTCAATTGCCTCAGTTTCCGGCTCAGCTTCCTTTTCTGTTTCCGTTCCAACTGATTCCTGGATTACCTGATATAACAAAATGTTTCTCATCCGTGATGGATATTCCTGGATGCATTGCAGAGATTTCTCAATCCATTTTCACTGGAAAGTTCGGTAATTTAGGTCCGACTTGTTGCAAAGCATTTCTGGACGCCGATAATTGCATACCGAAAATTCCATTCATTCCACCGATGCTAAAGGAACAATGTTCAAGAGTTGCCGGTGCAACTCCTCCCATACCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

115

Amino Acids

12.38

Weight (kDa)

8.2

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 47 - 92 6.3e-08 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 252
AgsI TTSAA 1 cut(s) 312
AjnI CCWGG 2 cut(s) 118, 166
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
ApoI RAATTY 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 224
AvaII GGWCC 1 cut(s) 224
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 2 cut(s) 120, 168
BfaI CTAG 1 cut(s) 29
BlpI GCTNAGC 1 cut(s) 84
Bme1390I CCNGG 2 cut(s) 120, 168
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 120, 168
BmsI GCATC 2 cut(s) 161, 282
Bpu1102I GCTNAGC 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 2 cut(s) 120, 168
BseGI GGATG 2 cut(s) 149, 176
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 86, 98
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 80, 321
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 85, 97
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 320
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 120, 168
BstACI GRCGYC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 72, 84
BstF5I GGATG 2 cut(s) 149, 176
BstNI CCWGG 2 cut(s) 120, 168
BstSCI CCNGG 2 cut(s) 118, 166
BtsCI GGATG 2 cut(s) 149, 176
BtsIMutI CAGTG 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 260
CviJI RGCY 2 cut(s) 83, 88
CviKI_1 RGCY 2 cut(s) 83, 88
DdeI CTNAG 2 cut(s) 72, 84
Eco47I GGWCC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 118, 166
EcoT22I ATGCAT 1 cut(s) 176
FaiI YATR 5 cut(s) 40, 47, 134, 266, 338
FokI GGATG 2 cut(s) 136, 183
FspBI CTAG 1 cut(s) 29
HapII CCGG 2 cut(s) 80, 321
HgaI GACGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 252
HinfI GANTC 1 cut(s) 115
HpaII CCGG 2 cut(s) 80, 321
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 248, 312
HpyCH4V TGCA 5 cut(s) 174, 179, 237, 264, 326
HpyF3I CTNAG 2 cut(s) 72, 84
Hsp92I GRCGYC 1 cut(s) 252
LpnPI CCDG 9 cut(s) 93, 105, 132, 141, 153, 180, 189, 233, 334
LweI GCATC 2 cut(s) 161, 282
MaeI CTAG 1 cut(s) 29
MfeI CAATTG 1 cut(s) 65
MluCI AATT 4 cut(s) 65, 217, 259, 273
MmeI TCCRAC 2 cut(s) 133, 251
MnlI CCTC 2 cut(s) 81, 342
Mph1103I ATGCAT 1 cut(s) 176
MspI CCGG 2 cut(s) 80, 321
MspR9I CCNGG 2 cut(s) 120, 168
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 2 cut(s) 120, 168
NsiI ATGCAT 1 cut(s) 176
PfeI GAWTC 1 cut(s) 115
PfoI TCCNGGA 2 cut(s) 118, 166
Psp6I CCWGG 2 cut(s) 118, 166
PspGI CCWGG 2 cut(s) 118, 166
PspPI GGNCC 1 cut(s) 224
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 120, 168
SetI ASST 3 cut(s) 90, 130, 226
SfaNI GCATC 2 cut(s) 161, 282
SinI GGWCC 1 cut(s) 224
Sse9I AATT 4 cut(s) 65, 217, 259, 273
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 118, 166
TasI AATT 4 cut(s) 65, 217, 259, 273
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 2 cut(s) 93, 142
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.