Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Forward (+)

11818230 .. 11819646

Gene Structure 1417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGGTTGTTGCTGCGTTTTTGCTTGCCGTCTTGAGCGGGAAAGCTTCCCCAACCACTGGCGATATCAAGGATATTCTTGGATCAGTTGGTGCTGAGACAGAGGATTCTCAGATTGAGCTTTTGTTGAAGGAAGTGAAAGGGAAAGACTTGGCTGAGCTAATTGCTGCTGGAAGGGAGAAGTTAGCTTCAGTACCATCAGGAGGTGGTGGTGGTGTTGCGGTTGCTTCTGCTACATCTGGAGGTGGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCAAGAAAGAAGAGAAGAAAGAAGAGAAAGAAGAATCCGATGATGACATGGGTTTCAGTTTGTTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

115

Amino Acids

11.45

Weight (kDa)

4.59

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	39 - 126	6.2e-21	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	2 cut(s)	39, 221
AclWI	GGATC	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	59, 203
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	4 cut(s)	47, 121, 160, 188
AluI	AGCT	4 cut(s)	47, 121, 160, 188
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	14, 167, 269
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	154, 256
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	15, 168, 270
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	3 cut(s)	16, 169, 271
BpmI	CTGGAG	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 203
Bse1I	ACTGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	59, 203
BseMII	CTCAG	4 cut(s)	87, 125, 147, 264
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	154, 256
BsiHKAI	GWGCWC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	59, 203
BsmAI	GTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	83
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	39, 221
BspCNI	CTCAG	4 cut(s)	88, 124, 148, 265
BspPI	GGATC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	83
Bst6I	CTCTTC	2 cut(s)	282, 294
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	4 cut(s)	96, 111, 156, 273
BstKTI	GATC	1 cut(s)	86
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	154, 256
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	5 cut(s)	47, 121, 155, 160, 188
CviKI_1	RGCY	5 cut(s)	47, 121, 155, 160, 188
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	4 cut(s)	96, 111, 156, 273
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	282, 294
EarI	CTCTTC	2 cut(s)	282, 294
Eco32I	GATATC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	67
FaeI	CATG	1 cut(s)	328
FaiI	YATR	1 cut(s)	326
FatI	CATG	1 cut(s)	324
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	15, 168, 270
Fsp4HI	GCNGC	3 cut(s)	15, 168, 270
GluI	GCNGC	3 cut(s)	15, 168, 270
GsuI	CTGGAG	1 cut(s)	261
Hin1II	CATG	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	3 cut(s)	107, 275, 311
Hpy188I	TCNGA	2 cut(s)	114, 316
Hpy188III	TCNNGA	3 cut(s)	34, 201, 240
HpyAV	CCTTC	2 cut(s)	124, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	4 cut(s)	96, 111, 156, 273
Hsp92II	CATG	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	5 cut(s)	45, 156, 186, 225, 279
Lsp1109I	GCAGC	2 cut(s)	154, 256
MalI	GATC	1 cut(s)	85
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	1 cut(s)	83
MboII	GAAGA	4 cut(s)	299, 304, 311, 320
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	97, 197, 236, 242, 245
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	107, 311
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	16, 169, 271
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	3 cut(s)	15, 168, 270
Sau3AI	GATC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	8 cut(s)	9, 49, 123, 162, 190, 208, 247, 256
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	2 cut(s)	39, 221
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	107, 311
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	3 cut(s)	14, 167, 269
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.