Belongs to the eukaryotic ribosomal protein P1 P2 family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_60s | PF00428 | 17 - 85 | 2.6e-13 | 60s Acidic ribosomal protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 203 |
| AciI | CCGC | 2 cut(s) | 39, 243 |
| AcuI | CTGAAG | 3 cut(s) | 101, 117, 274 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 174, 203, 239 |
| AluBI | AGCT | 1 cut(s) | 160 |
| AluI | AGCT | 1 cut(s) | 160 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 227 |
| ApeKI | GCWGC | 3 cut(s) | 14, 227, 251 |
| AspLEI | GCGC | 1 cut(s) | 86 |
| AsuHPI | GGTGA | 1 cut(s) | 19 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| BbvI | GCAGC | 2 cut(s) | 214, 238 |
| BccI | CCATC | 1 cut(s) | 205 |
| BfaI | CTAG | 1 cut(s) | 304 |
| BfoI | RGCGCY | 1 cut(s) | 87 |
| BglII | AGATCT | 1 cut(s) | 258 |
| BisI | GCNGC | 4 cut(s) | 15, 40, 228, 252 |
| BlsI | GCNGC | 4 cut(s) | 16, 41, 229, 253 |
| BmsI | GCATC | 1 cut(s) | 84 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BpuEI | CTTGAG | 1 cut(s) | 113 |
| BsaJI | CCNNGG | 1 cut(s) | 79 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 201, 231 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 174, 203, 239 |
| BseDI | CCNNGG | 1 cut(s) | 79 |
| BseGI | GGATG | 1 cut(s) | 75 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 174, 203, 239 |
| BseMII | CTCAG | 1 cut(s) | 269 |
| BseXI | GCAGC | 2 cut(s) | 214, 238 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 174, 203, 239 |
| Bsp143I | GATC | 2 cut(s) | 9, 258 |
| BspACI | CCGC | 2 cut(s) | 39, 243 |
| BspCNI | CTCAG | 1 cut(s) | 268 |
| BssECI | CCNNGG | 1 cut(s) | 79 |
| BssMI | GATC | 2 cut(s) | 9, 258 |
| BssT1I | CCWWGG | 1 cut(s) | 79 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 227 |
| BstC8I | GCNNGC | 1 cut(s) | 27 |
| BstDEI | CTNAG | 1 cut(s) | 255 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 172 |
| BstF5I | GGATG | 1 cut(s) | 75 |
| BstH2I | RGCGCY | 1 cut(s) | 87 |
| BstHHI | GCGC | 1 cut(s) | 86 |
| BstKTI | GATC | 2 cut(s) | 12, 261 |
| BstMBI | GATC | 2 cut(s) | 9, 258 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 48, 81, 92, 227, 233 |
| BstV1I | GCAGC | 2 cut(s) | 214, 238 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BstX2I | RGATCY | 1 cut(s) | 258 |
| BstYI | RGATCY | 1 cut(s) | 258 |
| BtsCI | GGATG | 1 cut(s) | 75 |
| BtsI | GCAGTG | 1 cut(s) | 228 |
| BtsIMutI | CAGTG | 1 cut(s) | 228 |
| Cac8I | GCNNGC | 1 cut(s) | 27 |
| CaiI | CAGNNNCTG | 1 cut(s) | 227 |
| CfoI | GCGC | 1 cut(s) | 86 |
| CviJI | RGCY | 6 cut(s) | 51, 115, 160, 188, 227, 288 |
| CviKI_1 | RGCY | 6 cut(s) | 51, 115, 160, 188, 227, 288 |
| DdeI | CTNAG | 1 cut(s) | 255 |
| DpnI | GATC | 2 cut(s) | 11, 260 |
| DpnII | GATC | 2 cut(s) | 9, 258 |
| Eco130I | CCWWGG | 1 cut(s) | 79 |
| Eco57I | CTGAAG | 3 cut(s) | 101, 117, 274 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 172 |
| EcoT14I | CCWWGG | 1 cut(s) | 79 |
| ErhI | CCWWGG | 1 cut(s) | 79 |
| FaiI | YATR | 3 cut(s) | 152, 264, 284 |
| Fnu4HI | GCNGC | 4 cut(s) | 15, 40, 228, 252 |
| FokI | GGATG | 1 cut(s) | 62 |
| Fsp4HI | GCNGC | 4 cut(s) | 15, 40, 228, 252 |
| FspBI | CTAG | 1 cut(s) | 304 |
| GlaI | GCGC | 1 cut(s) | 85 |
| GluI | GCNGC | 4 cut(s) | 15, 40, 228, 252 |
| HaeII | RGCGCY | 1 cut(s) | 87 |
| HhaI | GCGC | 1 cut(s) | 86 |
| Hin6I | GCGC | 1 cut(s) | 84 |
| HinP1I | GCGC | 1 cut(s) | 84 |
| HphI | GGTGA | 1 cut(s) | 19 |
| Hpy188I | TCNGA | 1 cut(s) | 258 |
| Hpy188III | TCNNGA | 2 cut(s) | 70, 171 |
| HpyAV | CCTTC | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 2 cut(s) | 221, 272 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 48, 81, 92, 227, 233 |
| HpyF3I | CTNAG | 1 cut(s) | 255 |
| HspAI | GCGC | 1 cut(s) | 84 |
| Kzo9I | GATC | 2 cut(s) | 9, 258 |
| LpnPI | CCDG | 7 cut(s) | 61, 97, 125, 156, 186, 222, 246 |
| Lsp1109I | GCAGC | 2 cut(s) | 214, 238 |
| LweI | GCATC | 1 cut(s) | 84 |
| MaeI | CTAG | 1 cut(s) | 304 |
| MalI | GATC | 2 cut(s) | 11, 260 |
| MboI | GATC | 2 cut(s) | 9, 258 |
| MboII | GAAGA | 2 cut(s) | 74, 116 |
| MflI | RGATCY | 1 cut(s) | 258 |
| MnlI | CCTC | 2 cut(s) | 178, 203 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 48, 81, 92, 227, 233 |
| NdeII | GATC | 2 cut(s) | 9, 258 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 203 |
| PkrI | GCNGC | 4 cut(s) | 16, 41, 229, 253 |
| PstNI | CAGNNNCTG | 1 cut(s) | 227 |
| PsuI | RGATCY | 1 cut(s) | 258 |
| SatI | GCNGC | 4 cut(s) | 15, 40, 228, 252 |
| Sau3AI | GATC | 2 cut(s) | 9, 258 |
| SetI | ASST | 3 cut(s) | 9, 162, 214 |
| SfaNI | GCATC | 1 cut(s) | 84 |
| SmlI | CTYRAG | 1 cut(s) | 128 |
| SmoI | CTYRAG | 1 cut(s) | 128 |
| SsiI | CCGC | 2 cut(s) | 39, 243 |
| SspMI | CTAG | 1 cut(s) | 304 |
| StyI | CCWWGG | 1 cut(s) | 79 |
| TauI | GCSGC | 1 cut(s) | 42 |
| TscAI | CASTG | 1 cut(s) | 228 |
| TseI | GCWGC | 3 cut(s) | 14, 227, 251 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 228 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 203 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 172 |
| XspI | CTAG | 1 cut(s) | 304 |