Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

14334250 .. 14335998

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1138800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTATATGAAGGTTGTTGCTGCATACTTGCTCGCTGTTTTGGGAGGGAAGAGCAGCCCCTCAGCTGCTGACTTGAAGGACATTCTCGGATCAGTTGGAGCTGAGGCAGATGGTGACAAGATTGAGTTGCTATTGTCCGAAGTCAAGGGAAAAGATATCACAGAGCTGATTGCATCTGGAAGGGAGAAGTTGGCATCTGTTCCATCTGGTGGTGGTGGTGCAGTTGCTTATTCTACACCCGCAGCCGGCGGTGGTGGTGGGGCTGCTGTTCCTGCCGCTGCTGAGCAGAAGAAGGAGGAGAAGGTGGAAGAAAAGGAAGAATCAGATGATGATATGGGTTTCAGCCTTTTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

119

Amino Acids

11.86

Weight (kDa)

4.46

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	19 - 117	9.8e-24	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AciI	CCGC	3 cut(s)	240, 249, 276
AclWI	GGATC	1 cut(s)	97
AfiI	CCNNNNNNNGG	2 cut(s)	209, 245
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	3 cut(s)	65, 101, 166
AluI	AGCT	3 cut(s)	65, 101, 166
AlwI	GGATC	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	68
ApeKI	GCWGC	6 cut(s)	20, 54, 65, 242, 263, 278
AsuHPI	GGTGA	1 cut(s)	125
BbvCI	CCTCAGC	2 cut(s)	61, 102
BbvI	GCAGC	6 cut(s)	7, 52, 66, 250, 254, 265
BccI	CCATC	2 cut(s)	104, 211
BisI	GCNGC	7 cut(s)	21, 55, 66, 243, 264, 276, 279
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	7 cut(s)	22, 56, 67, 244, 265, 277, 280
BmsI	GCATC	2 cut(s)	182, 203
Bpu10I	CCTNAGC	2 cut(s)	61, 102
Bpu1102I	GCTNAGC	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 245
Bse118I	RCCGGY	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	209, 245
BseMII	CTCAG	3 cut(s)	75, 93, 273
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	6 cut(s)	7, 52, 66, 250, 254, 265
BsgI	GTGCAG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	209, 245
Bsp143I	GATC	1 cut(s)	89
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	3 cut(s)	240, 249, 276
BspCNI	CTCAG	3 cut(s)	74, 94, 274
BspPI	GGATC	1 cut(s)	97
BspQI	GCTCTTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	245
BssMI	GATC	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	33, 247
BstDEI	CTNAG	3 cut(s)	61, 102, 282
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstV1I	GCAGC	6 cut(s)	7, 52, 66, 250, 254, 265
Cac8I	GCNNGC	2 cut(s)	33, 247
CaiI	CAGNNNCTG	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	245
CviJI	RGCY	7 cut(s)	57, 65, 101, 166, 245, 263, 345
CviKI_1	RGCY	7 cut(s)	57, 65, 101, 166, 245, 263, 345
DdeI	CTNAG	3 cut(s)	61, 102, 282
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	157
FaiI	YATR	4 cut(s)	6, 8, 25, 335
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	7 cut(s)	21, 55, 66, 243, 264, 276, 279
Fsp4HI	GCNGC	7 cut(s)	21, 55, 66, 243, 264, 276, 279
GluI	GCNGC	7 cut(s)	21, 55, 66, 243, 264, 276, 279
HapII	CCGG	1 cut(s)	246
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	89, 139, 325
Hpy188III	TCNNGA	1 cut(s)	177
HpyAV	CCTTC	5 cut(s)	4, 70, 174, 286, 295
HpyCH4V	TGCA	3 cut(s)	23, 173, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	61, 102, 282
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	89
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	4 cut(s)	162, 192, 259, 285
Lsp1109I	GCAGC	6 cut(s)	7, 52, 66, 250, 254, 265
LweI	GCATC	2 cut(s)	182, 203
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	4 cut(s)	61, 301, 320, 329
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	4 cut(s)	38, 70, 97, 289
MroNI	GCCGGC	1 cut(s)	245
MspA1I	CMGCKG	2 cut(s)	65, 278
MspI	CCGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	272
NaeI	GCCGGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	89
NgoMIV	GCCGGC	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	7 cut(s)	22, 56, 67, 244, 265, 277, 280
PstNI	CAGNNNCTG	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	44
SatI	GCNGC	7 cut(s)	21, 55, 66, 243, 264, 276, 279
Sau3AI	GATC	1 cut(s)	89
SetI	ASST	5 cut(s)	15, 67, 103, 168, 306
SfaNI	GCATC	2 cut(s)	182, 203
SsiI	CCGC	3 cut(s)	240, 249, 276
TaqI	TCGA	1 cut(s)	351
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	6 cut(s)	20, 54, 65, 242, 263, 278
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.