Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

30666494 .. 30667944

Gene Structure 1451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1207100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGGTGATAGCTGCATACTTGTTGGCTGTTTTGGGGGGCAAGAACACCCCTTCTGCCAATGATCTGAAGGACATCCTTGCCTCCGTTGGAGCCGAGGCCGATGATGACAGGATTCAACTTCTGTTTTCTGAAATCGAGGGTAAGGACATCACAAAGCTAATTGCGTCTGGGCGGGAAAAGTTGGCCTCCGTACCGGCTGGTGGTGGTGCTGCTGTTGCAGTGGCTGCCACTGCTGTTGGTGGTGGTGGTGGTGGTGCCGCTGCTCCTGCTGCAGCTGAGGCCAAGAAAGAGGCAAAGGTCGAGGAGAAAGAGGAATCCGATGAGGACATGGGCTTGAGTCTCTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

118

Amino Acids

11.63

Weight (kDa)

4.51

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	18 - 116	3.7e-20	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	2 cut(s)	175, 261
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	3 cut(s)	14, 160, 278
AluI	AGCT	3 cut(s)	14, 160, 278
Alw26I	GTCTC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	3 cut(s)	99, 186, 282
ApeKI	GCWGC	6 cut(s)	14, 212, 227, 263, 272, 275
AsuHPI	GGTGA	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	199, 214, 250, 259, 287
BcoDI	GTCTC	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	273
BisI	GCNGC	7 cut(s)	15, 213, 228, 261, 264, 273, 276
BlsI	GCNGC	7 cut(s)	16, 214, 229, 262, 265, 274, 277
BmiI	GGNNCC	2 cut(s)	94, 259
Bpu10I	CCTNAGC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	5 cut(s)	199, 214, 250, 259, 287
BshFI	GGCC	3 cut(s)	101, 188, 284
BshNI	GGYRCC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	101, 188, 284
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	2 cut(s)	175, 261
BspANI	GGCC	3 cut(s)	101, 188, 284
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	94, 259
BspMAI	CTGCAG	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	6 cut(s)	218, 227, 233, 269, 272, 281
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	199, 214, 250, 259, 287
BsuRI	GGCC	3 cut(s)	101, 188, 284
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	2 cut(s)	228, 231
BtsIMutI	CAGTG	2 cut(s)	228, 231
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	196
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	194
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	89
FaeI	CATG	1 cut(s)	334
FaiI	YATR	2 cut(s)	19, 332
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	7 cut(s)	15, 213, 228, 261, 264, 273, 276
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	7 cut(s)	15, 213, 228, 261, 264, 273, 276
GluI	GCNGC	7 cut(s)	15, 213, 228, 261, 264, 273, 276
HaeIII	GGCC	3 cut(s)	101, 188, 284
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	3 cut(s)	115, 317, 340
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	69, 133, 322
HpyAV	CCTTC	2 cut(s)	63, 64
HpyCH4V	TGCA	3 cut(s)	17, 221, 275
HpyF10VI	GCNNNNNNNGC	6 cut(s)	218, 227, 233, 269, 272, 281
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	92, 271
LpnPI	CCDG	5 cut(s)	97, 156, 186, 210, 282
Lsp1109I	GCAGC	5 cut(s)	199, 214, 250, 259, 287
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	337
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	9 cut(s)	91, 94, 133, 199, 274, 286, 298, 307, 319
MspA1I	CMGCKG	2 cut(s)	263, 278
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	6 cut(s)	218, 227, 233, 269, 272, 281
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	2 cut(s)	94, 259
NmeAIII	GCCGAG	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	115, 317
PkrI	GCNGC	7 cut(s)	16, 214, 229, 262, 265, 274, 277
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	94, 259
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	7 cut(s)	15, 213, 228, 261, 264, 273, 276
Sau3AI	GATC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	349
SetI	ASST	5 cut(s)	9, 16, 162, 280, 303
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	2 cut(s)	175, 261
TaqI	TCGA	3 cut(s)	138, 303, 348
TasI	AATT	1 cut(s)	162
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	115, 317
TscAI	CASTG	2 cut(s)	228, 238
TseI	GCWGC	6 cut(s)	14, 212, 227, 263, 272, 275
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	76, 181
TspRI	CASTG	2 cut(s)	228, 238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.