Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011581.1

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

26986 .. 29092

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011581.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgaggcctcagtggccacctaatgggtgcttaatgtccaatagcgttcagaatggattagtccggctctactgggataccaccgaagggtatctccagcctctctctctctcaaagatgaaggtgatcgctgcttatttgctcgctgtgttgggcggcaagaccagccctactgccgaagacatcaagtgcatccttggcgccgttggtgctgaagcagatgatgacaggcttcagtttcttctcaaggaagttcagggtaaggacataacagagcttattgcctctggaagggagaagttggcttctgttccatctggtggtggaggtgccgttgcagtggctgcccctactgctggcggtggtgctgctcctgctgcagctgaggcaaagaaggaagaaaaggttgaggagaaagaggagtctgatgatgatatgggcttcagtctgtttgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

152

Amino Acids

15.91

Weight (kDa)

4.6

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	200, 329
AccB7I	CCANNNNNTGG	2 cut(s)	23, 320
AciI	CCGC	2 cut(s)	156, 360
AcoI	YGGCCR	1 cut(s)	14
AcuI	CTGAAG	3 cut(s)	218, 234, 427
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	5 cut(s)	23, 87, 291, 320, 356
AluBI	AGCT	2 cut(s)	277, 383
AluI	AGCT	2 cut(s)	277, 383
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	5, 14
ApeKI	GCWGC	5 cut(s)	131, 344, 368, 377, 380
AspLEI	GCGC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	16
BanI	GGYRCC	2 cut(s)	200, 329
BbsI	GAAGAC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	5 cut(s)	118, 331, 355, 364, 392
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	2 cut(s)	188, 317
BciVI	GTATCC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	457
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	13
BisI	GCNGC	6 cut(s)	132, 157, 345, 369, 378, 381
BlsI	GCNGC	6 cut(s)	133, 158, 346, 370, 379, 382
BmiI	GGNNCC	2 cut(s)	202, 331
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 87, 291, 320, 356
Bse1I	ACTGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	5 cut(s)	23, 87, 291, 320, 356
BseMII	CTCAG	2 cut(s)	23, 375
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	425, 434
BseXI	GCAGC	5 cut(s)	118, 331, 355, 364, 392
BshFI	GGCC	2 cut(s)	7, 16
BshNI	GGYRCC	2 cut(s)	200, 329
BsiSI	CCGG	1 cut(s)	64
BslI	CCNNNNNNNGG	5 cut(s)	23, 87, 291, 320, 356
BsnI	GGCC	2 cut(s)	7, 16
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	156, 360
BspANI	GGCC	2 cut(s)	7, 16
BspCNI	CTCAG	2 cut(s)	22, 376
BspLI	GGNNCC	2 cut(s)	202, 331
BspMAI	CTGCAG	1 cut(s)	382
BspT107I	GGYRCC	2 cut(s)	200, 329
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	144, 358
BstDEI	CTNAG	2 cut(s)	9, 384
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 165, 198, 209, 344, 353, 374, 377, 386
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	118, 331, 355, 364, 392
BstV2I	GAAGAC	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	7, 16
BtsCI	GGATG	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	17, 345
Cac8I	GCNNGC	2 cut(s)	144, 358
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	203
DdeI	CTNAG	2 cut(s)	9, 384
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	196
Eco147I	AGGCCT	1 cut(s)	7
Eco57I	CTGAAG	3 cut(s)	218, 234, 427
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	196
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	196
FaiI	YATR	2 cut(s)	269, 437
Fnu4HI	GCNGC	6 cut(s)	132, 157, 345, 369, 378, 381
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	6 cut(s)	132, 157, 345, 369, 378, 381
FspBI	CTAG	1 cut(s)	457
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	6 cut(s)	132, 157, 345, 369, 378, 381
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	7, 16
HapII	CCGG	1 cut(s)	64
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	51, 427
Hpy188III	TCNNGA	1 cut(s)	288
HpyAV	CCTTC	4 cut(s)	80, 115, 285, 388
HpyCH4V	TGCA	3 cut(s)	192, 338, 380
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 165, 198, 209, 344, 353, 374, 377, 386
HpyF3I	CTNAG	2 cut(s)	9, 384
Hsp92I	GRCGYC	1 cut(s)	201
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	5 cut(s)	118, 331, 355, 364, 392
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	457
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	3 cut(s)	191, 233, 410
MlsI	TGGCCA	1 cut(s)	16
MluNI	TGGCCA	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	7 cut(s)	18, 111, 295, 320, 379, 403, 412
Mox20I	TGGCCA	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	16
MseI	TTAA	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	16
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	9 cut(s)	13, 165, 198, 209, 344, 353, 374, 377, 386
NarI	GGCGCC	1 cut(s)	201
NdeII	GATC	1 cut(s)	126
NlaIV	GGNNCC	2 cut(s)	202, 331
PceI	AGGCCT	1 cut(s)	7
PflMI	CCANNNNNTGG	2 cut(s)	23, 320
PkrI	GCNGC	6 cut(s)	133, 158, 346, 370, 379, 382
PleI	GAGTC	1 cut(s)	430
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	202, 331
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	6 cut(s)	132, 157, 345, 369, 378, 381
Sau3AI	GATC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	431
SetI	ASST	6 cut(s)	22, 126, 279, 331, 385, 408
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	378
SfiI	GGCCNNNNNGGCC	1 cut(s)	13
SfoI	GGCGCC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	156, 360
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	457
StuI	AGGCCT	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	196
TauI	GCSGC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	2 cut(s)	17, 345
TseI	GCWGC	5 cut(s)	131, 344, 368, 377, 380
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	17, 345
Van91I	CCANNNNNTGG	2 cut(s)	23, 320
XagI	CCTNNNNNAGG	1 cut(s)	289
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.