Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

1764131 .. 1766053

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1018800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGGTGGTCGCTGCATACTTGTTGGCTGTGTTGGGCGGAAAGACCACCCCTACCGCCGAAGATCTCAAGGACATCCTTGGCTCCGTTGGCGCCGAGGCTGATGATGACAGGATTCAACTTCTGCTTTCCGAAGTCAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGAAGGGAAAAGTTGGCCTCCGTACCAGCTGGTGGAGGTGGTGCTGTTGCAGTTGCTGCAATTGGTGGTGGTGGTGGAGCTGCCGCTGCTCCTGCTGCAGCTGAGGCAAAGAAAGAGGAGAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

116

Amino Acids

11.49

Weight (kDa)

4.4

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	18 - 114	8e-25	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	3 cut(s)	39, 57, 255
AcuI	CTGAAG	1 cut(s)	316
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	174, 203
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	4 cut(s)	160, 200, 251, 272
AluI	AGCT	4 cut(s)	160, 200, 251, 272
Alw26I	GTCTC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	170
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	6 cut(s)	14, 227, 251, 257, 266, 269
AspLEI	GCGC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	92
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	214, 238, 244, 253, 281
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	346
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	96
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	7 cut(s)	15, 228, 252, 255, 258, 267, 270
BlsI	GCNGC	7 cut(s)	16, 229, 253, 256, 259, 268, 271
BmiI	GGNNCC	2 cut(s)	85, 94
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	79, 96
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 203
BseAI	TCCGGA	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	79, 96
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	174, 203
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	2 cut(s)	302, 314
BseXI	GCAGC	5 cut(s)	214, 238, 244, 253, 281
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	174, 203
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	188
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	3 cut(s)	39, 57, 255
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	85, 94
BspMAI	CTGCAG	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	79, 96
BssMI	GATC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	273
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 227, 257, 263, 266, 275
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	5 cut(s)	214, 238, 244, 253, 281
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	9 cut(s)	29, 84, 101, 160, 188, 200, 251, 272, 330
CviKI_1	RGCY	9 cut(s)	29, 84, 101, 160, 188, 200, 251, 272, 330
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	273
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	79
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	328
FaiI	YATR	2 cut(s)	19, 326
FatI	CATG	1 cut(s)	324
Fnu4HI	GCNGC	7 cut(s)	15, 228, 252, 255, 258, 267, 270
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	7 cut(s)	15, 228, 252, 255, 258, 267, 270
FspBI	CTAG	1 cut(s)	346
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	7 cut(s)	15, 228, 252, 255, 258, 267, 270
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	2 cut(s)	115, 311
HpaII	CCGG	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	133, 316
Hpy188III	TCNNGA	1 cut(s)	171
HpyAV	CCTTC	2 cut(s)	168, 286
HpyCH4V	TGCA	4 cut(s)	17, 221, 230, 269
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 227, 257, 263, 266, 275
HpyF3I	CTNAG	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	1 cut(s)	93
KasI	GGCGCC	1 cut(s)	92
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	3 cut(s)	89, 248, 265
LpnPI	CCDG	5 cut(s)	97, 184, 186, 210, 276
Lsp1109I	GCAGC	5 cut(s)	214, 238, 244, 253, 281
MaeI	CTAG	1 cut(s)	346
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	74
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	2 cut(s)	162, 231
Mly113I	GGCGCC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	91, 178, 199, 200, 268, 280, 292, 301
MroI	TCCGGA	1 cut(s)	170
MspA1I	CMGCKG	3 cut(s)	200, 257, 272
MspI	CCGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	6 cut(s)	90, 227, 257, 263, 266, 275
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	85, 94
NmeAIII	GCCGAG	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	115, 311
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	7 cut(s)	16, 229, 253, 256, 259, 268, 271
PluTI	GGCGCC	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	85, 94
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	2 cut(s)	200, 272
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	7 cut(s)	15, 228, 252, 255, 258, 267, 270
Sau3AI	GATC	1 cut(s)	64
SetI	ASST	7 cut(s)	9, 162, 202, 211, 253, 274, 297
SfcI	CTRYAG	1 cut(s)	267
SfoI	GGCGCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	162, 231
SsiI	CCGC	3 cut(s)	39, 57, 255
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	79
TaqI	TCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	162, 231
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	115, 311
TseI	GCWGC	6 cut(s)	14, 227, 251, 257, 266, 269
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	76, 181
Van91I	CCANNNNNTGG	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	172
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.