Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Forward (+)

19139041 .. 19140661

Gene Structure 1621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGGTGATCGCTGCTTATTTACTTGCGTTGTTGGGCGGCAAGACCTGCCCTACCGCCGAGGACATTAAGACCATCCTTAGCGCCGTTGGTGCTGAAGCTGATGAGGACAGGATTCAGCTTCTTCTTATGGAAGTTCAGGGTAAGGACATAACTGAGCTTATTGCTTCTGGACGGGAGAAGTTGGCCTCTGTCCCATCTGGTGGCGGTGGTGCTGTTGCAGTGGCTGCCCCCGCTGGTGGTGGCGGCAGCGCTGCTCCTGCTGCAGCTGAGGCAAAGAAGGAAGAGAAGGTCGAGGAGAAAGAGGAGTCCGATGATGATATGGGCTTCAGTCTCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

115

Amino Acids

11.53

Weight (kDa)

4.39

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	18 - 113	7.6e-27	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	5 cut(s)	39, 57, 207, 234, 246
AcuI	CTGAAG	2 cut(s)	117, 313
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	203, 239
AluBI	AGCT	4 cut(s)	101, 121, 160, 269
AluI	AGCT	4 cut(s)	101, 121, 160, 269
Alw26I	GTCTC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	6 cut(s)	14, 227, 249, 254, 263, 266
AspLEI	GCGC	2 cut(s)	86, 254
AsuHPI	GGTGA	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	5 cut(s)	214, 241, 250, 261, 278
BccI	CCATC	2 cut(s)	83, 205
BceAI	ACGGC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	2 cut(s)	87, 255
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	8 cut(s)	15, 40, 228, 247, 250, 255, 264, 267
BlsI	GCNGC	8 cut(s)	16, 41, 229, 248, 251, 256, 265, 268
Bpu10I	CCTNAGC	2 cut(s)	80, 270
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 239
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	203, 239
BseMII	CTCAG	2 cut(s)	147, 261
BseRI	GAGGAG	2 cut(s)	311, 320
BseXI	GCAGC	5 cut(s)	214, 241, 250, 261, 278
BshFI	GGCC	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	203, 239
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	5 cut(s)	39, 57, 207, 234, 246
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	148, 262
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	2 cut(s)	48, 227
BstDEI	CTNAG	3 cut(s)	80, 156, 270
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	2 cut(s)	87, 255
BstHHI	GCGC	2 cut(s)	86, 254
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 92, 227, 233, 260, 263, 272
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	5 cut(s)	214, 241, 250, 261, 278
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	56
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	2 cut(s)	86, 254
CviJI	RGCY	7 cut(s)	101, 121, 160, 188, 227, 269, 327
CviKI_1	RGCY	7 cut(s)	101, 121, 160, 188, 227, 269, 327
DdeI	CTNAG	3 cut(s)	80, 156, 270
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco47III	AGCGCT	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	117, 313
FaiI	YATR	3 cut(s)	131, 152, 323
FaqI	GGGAC	1 cut(s)	179
FauI	CCCGC	1 cut(s)	241
Fnu4HI	GCNGC	8 cut(s)	15, 40, 228, 247, 250, 255, 264, 267
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	8 cut(s)	15, 40, 228, 247, 250, 255, 264, 267
GlaI	GCGC	2 cut(s)	85, 253
GluI	GCNGC	8 cut(s)	15, 40, 228, 247, 250, 255, 264, 267
HaeII	RGCGCY	2 cut(s)	87, 255
HaeIII	GGCC	1 cut(s)	188
HhaI	GCGC	2 cut(s)	86, 254
Hin6I	GCGC	2 cut(s)	84, 252
HinP1I	GCGC	2 cut(s)	84, 252
HinfI	GANTC	2 cut(s)	115, 308
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	171
HpyAV	CCTTC	2 cut(s)	274, 283
HpyCH4V	TGCA	2 cut(s)	221, 266
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 92, 227, 233, 260, 263, 272
HpyF3I	CTNAG	3 cut(s)	80, 156, 270
HspAI	GCGC	2 cut(s)	84, 252
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	7 cut(s)	61, 97, 125, 156, 186, 222, 273
Lsp1109I	GCAGC	5 cut(s)	214, 241, 250, 261, 278
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	116, 296
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	6 cut(s)	55, 100, 199, 265, 289, 298
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	2 cut(s)	236, 269
MwoI	GCNNNNNNNGC	7 cut(s)	48, 92, 227, 233, 260, 263, 272
NdeII	GATC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	8 cut(s)	16, 41, 229, 248, 251, 256, 265, 268
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	8 cut(s)	15, 40, 228, 247, 250, 255, 264, 267
Sau3AI	GATC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	317
SetI	ASST	7 cut(s)	9, 50, 103, 123, 162, 271, 294
SfcI	CTRYAG	1 cut(s)	264
SsiI	CCGC	5 cut(s)	39, 57, 207, 234, 246
TaqI	TCGA	1 cut(s)	294
TauI	GCSGC	2 cut(s)	42, 249
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	6 cut(s)	14, 227, 249, 254, 263, 266
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.