Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

18429470 .. 18431244

Gene Structure 1775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43824

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGGTGATCGCTGCTTATTTGCTGGCTGTGTTGGGCGGCAAGACCAGCCCTACTGCCGAAGACATCAAGAGCATCCTTGGCGCCGTTGGTGCTGAAGCAGATGATGACAGGCTTCAGTTTCTTCTCAAGGAAGTTCAGGGTAAGGACATAACAGAGCTTATTGCCTCTGGAAGGGAGAAGTTGGCTTCTGTTCCATCTGGTGGTGGAGGTGCTGTTGCAGTGGCTGCCCCTGCTGCTGCTGGTGCTGCTCCTGCTGCAGCTGAGGCAAAGAAGGAAGAAAAGGTTGAGGAGAAAGAGGAGTCTGATGATGATATGGGCTTCAGTCTGTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

112

Amino Acids

11.36

Weight (kDa)

4.46

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	17 - 111	4.8e-27	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	1 cut(s)	39
AcuI	CTGAAG	3 cut(s)	101, 117, 307
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	174, 203
AluBI	AGCT	2 cut(s)	160, 263
AluI	AGCT	2 cut(s)	160, 263
AlwNI	CAGNNNCTG	1 cut(s)	227
ApeKI	GCWGC	7 cut(s)	14, 227, 236, 239, 248, 257, 260
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	6 cut(s)	214, 223, 226, 235, 244, 272
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	337
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	8 cut(s)	15, 40, 228, 237, 240, 249, 258, 261
BlsI	GCNGC	8 cut(s)	16, 41, 229, 238, 241, 250, 259, 262
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 203
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	174, 203
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	305, 314
BseXI	GCAGC	6 cut(s)	214, 223, 226, 235, 244, 272
BshNI	GGYRCC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	174, 203
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	264
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	6 cut(s)	214, 223, 226, 235, 244, 272
BstV2I	GAAGAC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	86
CviJI	RGCY	8 cut(s)	29, 51, 115, 160, 188, 227, 263, 321
CviKI_1	RGCY	8 cut(s)	29, 51, 115, 160, 188, 227, 263, 321
DdeI	CTNAG	1 cut(s)	264
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	79
Eco57I	CTGAAG	3 cut(s)	101, 117, 307
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	79
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	79
FaiI	YATR	2 cut(s)	152, 317
Fnu4HI	GCNGC	8 cut(s)	15, 40, 228, 237, 240, 249, 258, 261
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	8 cut(s)	15, 40, 228, 237, 240, 249, 258, 261
FspBI	CTAG	1 cut(s)	337
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	8 cut(s)	15, 40, 228, 237, 240, 249, 258, 261
HaeII	RGCGCY	1 cut(s)	87
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	302
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	70, 171
HpyAV	CCTTC	2 cut(s)	168, 268
HpyCH4V	TGCA	2 cut(s)	221, 260
HpyF3I	CTNAG	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	1 cut(s)	84
KasI	GGCGCC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	11, 61, 97, 125, 156, 186, 228, 246, 267
Lsp1109I	GCAGC	6 cut(s)	214, 223, 226, 235, 244, 272
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	337
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	3 cut(s)	74, 116, 290
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	5 cut(s)	178, 203, 259, 283, 292
MspA1I	CMGCKG	1 cut(s)	263
NarI	GGCGCC	1 cut(s)	84
NdeII	GATC	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	85
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	8 cut(s)	16, 41, 229, 238, 241, 250, 259, 262
PleI	GAGTC	1 cut(s)	310
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	263
SatI	GCNGC	8 cut(s)	15, 40, 228, 237, 240, 249, 258, 261
Sau3AI	GATC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	311
SetI	ASST	5 cut(s)	9, 162, 214, 265, 288
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	258
SfoI	GGCGCC	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	1 cut(s)	39
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	79
TauI	GCSGC	1 cut(s)	42
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	7 cut(s)	14, 227, 236, 239, 248, 257, 260
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	172
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.